miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 5' -52.7 NC_001847.1 + 115800 0.66 0.972062
Target:  5'- aGCCGcUGCggCUCcGCGCGcugcgcugcgGCGGGCu -3'
miRNA:   3'- -CGGC-ACGa-GAGcCGCGCaaa-------UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 111287 0.66 0.975337
Target:  5'- gGCCGgggGCggcgCUCGGC-CGgggGCGGGg -3'
miRNA:   3'- -CGGCa--CGa---GAGCCGcGCaaaUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 130235 0.66 0.975337
Target:  5'- cGCCGgcGCggUCGGUGuCGUUcGCAgcGGCg -3'
miRNA:   3'- -CGGCa-CGagAGCCGC-GCAAaUGU--UCG- -5'
6681 5' -52.7 NC_001847.1 + 103954 0.66 0.969711
Target:  5'- gGCgGcGC-CUCGGCGCGcg-GCuccGGCa -3'
miRNA:   3'- -CGgCaCGaGAGCCGCGCaaaUGu--UCG- -5'
6681 5' -52.7 NC_001847.1 + 40993 0.66 0.969102
Target:  5'- gGCCGcgcucaccUGCUC-CGGCGuCGUgccguccugcaACGGGCg -3'
miRNA:   3'- -CGGC--------ACGAGaGCCGC-GCAaa---------UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 134770 0.66 0.966578
Target:  5'- uCCG-GCgcgCGGCGCGcgggGCGGGCc -3'
miRNA:   3'- cGGCaCGagaGCCGCGCaaa-UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 60486 0.66 0.972628
Target:  5'- cGCCGccGCUUugugCGcGCGCGggccgGCGGGCc -3'
miRNA:   3'- -CGGCa-CGAGa---GC-CGCGCaaa--UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 41625 0.66 0.977845
Target:  5'- cGCCGUGauggccgCgagCGGCGCGccgGgGGGCc -3'
miRNA:   3'- -CGGCACga-----Ga--GCCGCGCaaaUgUUCG- -5'
6681 5' -52.7 NC_001847.1 + 3900 0.66 0.966578
Target:  5'- aGCCGuUGCgcgCggUGGCGCGgacGCAcGCa -3'
miRNA:   3'- -CGGC-ACGa--Ga-GCCGCGCaaaUGUuCG- -5'
6681 5' -52.7 NC_001847.1 + 2546 0.66 0.964592
Target:  5'- aCCGcUGCUCuccggcgggcugucuUCGGCGCGg--GCGccuGCg -3'
miRNA:   3'- cGGC-ACGAG---------------AGCCGCGCaaaUGUu--CG- -5'
6681 5' -52.7 NC_001847.1 + 30481 0.66 0.969711
Target:  5'- cGCUGggacGCgaUCGGCGCGgcccuCGGGCg -3'
miRNA:   3'- -CGGCa---CGagAGCCGCGCaaau-GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 52285 0.66 0.966578
Target:  5'- cGCCG-GCUUUgUGuGCGCGaccGCGGGCg -3'
miRNA:   3'- -CGGCaCGAGA-GC-CGCGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 56087 0.66 0.977845
Target:  5'- cCCG-GCUC-CGGCGCcgcguUAAGCg -3'
miRNA:   3'- cGGCaCGAGaGCCGCGcaaauGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 56893 0.66 0.977845
Target:  5'- cGCCG-GCga-CGGCGaCGccgGCGGGCg -3'
miRNA:   3'- -CGGCaCGagaGCCGC-GCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 103245 0.66 0.977603
Target:  5'- gGCCGUGaUCUgCGGCggcauccGCGcg-ACGGGCu -3'
miRNA:   3'- -CGGCACgAGA-GCCG-------CGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 30060 0.66 0.966578
Target:  5'- uGCCG-GCgcggUGGCGCGgcUGgGAGUg -3'
miRNA:   3'- -CGGCaCGaga-GCCGCGCaaAUgUUCG- -5'
6681 5' -52.7 NC_001847.1 + 82867 0.66 0.975337
Target:  5'- gGCaCGUGCUCgcccgugCgGGCGCGccgcagcCAAGCc -3'
miRNA:   3'- -CG-GCACGAGa------G-CCGCGCaaau---GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 119252 0.66 0.977845
Target:  5'- gGCCGUcgauagcgaGCUCgUCGGCGCuGUcg--GAGCu -3'
miRNA:   3'- -CGGCA---------CGAG-AGCCGCG-CAaaugUUCG- -5'
6681 5' -52.7 NC_001847.1 + 5890 0.66 0.975337
Target:  5'- cGCCccUGC-CUCGcGCGCGUUgguCuGGCa -3'
miRNA:   3'- -CGGc-ACGaGAGC-CGCGCAAau-GuUCG- -5'
6681 5' -52.7 NC_001847.1 + 42703 0.66 0.975597
Target:  5'- cGCCGUGUgucgcacgauugaugCUuacCGGCGCGaguuCGGGCu -3'
miRNA:   3'- -CGGCACGa--------------GA---GCCGCGCaaauGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.