miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 5' -52.7 NC_001847.1 + 30481 0.66 0.969711
Target:  5'- cGCUGggacGCgaUCGGCGCGgcccuCGGGCg -3'
miRNA:   3'- -CGGCa---CGagAGCCGCGCaaau-GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 115800 0.66 0.972062
Target:  5'- aGCCGcUGCggCUCcGCGCGcugcgcugcgGCGGGCu -3'
miRNA:   3'- -CGGC-ACGa-GAGcCGCGCaaa-------UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 40100 0.66 0.972628
Target:  5'- cGCCgGUGC-CUCGGUugguagguGCGgcUGCGcgugGGCg -3'
miRNA:   3'- -CGG-CACGaGAGCCG--------CGCaaAUGU----UCG- -5'
6681 5' -52.7 NC_001847.1 + 52285 0.66 0.966578
Target:  5'- cGCCG-GCUUUgUGuGCGCGaccGCGGGCg -3'
miRNA:   3'- -CGGCaCGAGA-GC-CGCGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 30060 0.66 0.966578
Target:  5'- uGCCG-GCgcggUGGCGCGgcUGgGAGUg -3'
miRNA:   3'- -CGGCaCGaga-GCCGCGCaaAUgUUCG- -5'
6681 5' -52.7 NC_001847.1 + 67276 0.66 0.963223
Target:  5'- uGCCGccGUUCcCaGCGCGUc-GCGAGCg -3'
miRNA:   3'- -CGGCa-CGAGaGcCGCGCAaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 3900 0.66 0.966578
Target:  5'- aGCCGuUGCgcgCggUGGCGCGgacGCAcGCa -3'
miRNA:   3'- -CGGC-ACGa--Ga-GCCGCGCaaaUGUuCG- -5'
6681 5' -52.7 NC_001847.1 + 48677 0.66 0.972628
Target:  5'- uCCGUGCcgCcgUCGGCGcCGUcgGCGuccaGGCa -3'
miRNA:   3'- cGGCACGa-G--AGCCGC-GCAaaUGU----UCG- -5'
6681 5' -52.7 NC_001847.1 + 103954 0.66 0.969711
Target:  5'- gGCgGcGC-CUCGGCGCGcg-GCuccGGCa -3'
miRNA:   3'- -CGgCaCGaGAGCCGCGCaaaUGu--UCG- -5'
6681 5' -52.7 NC_001847.1 + 75939 0.66 0.965263
Target:  5'- cGCCGUGCgccgccacacgCGGCGUGUgcuCGuuGCa -3'
miRNA:   3'- -CGGCACGaga--------GCCGCGCAaauGUu-CG- -5'
6681 5' -52.7 NC_001847.1 + 118794 0.66 0.963223
Target:  5'- gGCCGUGCUg--GGCGCGc-UGCucGCc -3'
miRNA:   3'- -CGGCACGAgagCCGCGCaaAUGuuCG- -5'
6681 5' -52.7 NC_001847.1 + 2546 0.66 0.964592
Target:  5'- aCCGcUGCUCuccggcgggcugucuUCGGCGCGg--GCGccuGCg -3'
miRNA:   3'- cGGC-ACGAG---------------AGCCGCGCaaaUGUu--CG- -5'
6681 5' -52.7 NC_001847.1 + 40993 0.66 0.969102
Target:  5'- gGCCGcgcucaccUGCUC-CGGCGuCGUgccguccugcaACGGGCg -3'
miRNA:   3'- -CGGC--------ACGAGaGCCGC-GCAaa---------UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 64003 0.66 0.963223
Target:  5'- uGCCGcgaGCUCUacccgGGCGgCGgg-ACGGGCu -3'
miRNA:   3'- -CGGCa--CGAGAg----CCGC-GCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 105044 0.66 0.972628
Target:  5'- cGCCGcgGCgCUgGGCGCGg--GCGuguGGUa -3'
miRNA:   3'- -CGGCa-CGaGAgCCGCGCaaaUGU---UCG- -5'
6681 5' -52.7 NC_001847.1 + 60486 0.66 0.972628
Target:  5'- cGCCGccGCUUugugCGcGCGCGggccgGCGGGCc -3'
miRNA:   3'- -CGGCa-CGAGa---GC-CGCGCaaa--UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 31692 0.66 0.975337
Target:  5'- gGCCGUGUcugcgCUguaCGGCGCGa--GCGAGa -3'
miRNA:   3'- -CGGCACGa----GA---GCCGCGCaaaUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 30417 0.66 0.966578
Target:  5'- cGCCGgcaaGCUCguggCgGGCGCGgagGCGccggGGCu -3'
miRNA:   3'- -CGGCa---CGAGa---G-CCGCGCaaaUGU----UCG- -5'
6681 5' -52.7 NC_001847.1 + 134770 0.66 0.966578
Target:  5'- uCCG-GCgcgCGGCGCGcgggGCGGGCc -3'
miRNA:   3'- cGGCaCGagaGCCGCGCaaa-UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 120494 0.66 0.963223
Target:  5'- cGCCccGCUCgcagcgagCGGCGC----GCGAGCg -3'
miRNA:   3'- -CGGcaCGAGa-------GCCGCGcaaaUGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.