miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 5' -52.7 NC_001847.1 + 1141 0.66 0.969711
Target:  5'- gGCgGcGC-CUCGGCGCGcg-GCuccGGCa -3'
miRNA:   3'- -CGgCaCGaGAGCCGCGCaaaUGu--UCG- -5'
6681 5' -52.7 NC_001847.1 + 1205 0.68 0.932584
Target:  5'- uCCGUGCgCUCGGUGUucUUuuagcgcGCGGGCg -3'
miRNA:   3'- cGGCACGaGAGCCGCGcaAA-------UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 1513 0.68 0.933102
Target:  5'- aGCCGcgcguagGCggcCUCGGCGCGcgcgaAGGCg -3'
miRNA:   3'- -CGGCa------CGa--GAGCCGCGCaaaugUUCG- -5'
6681 5' -52.7 NC_001847.1 + 2231 0.66 0.972628
Target:  5'- cGCCGcgGCgCUgGGCGCGg--GCGuguGGUa -3'
miRNA:   3'- -CGGCa-CGaGAgCCGCGCaaaUGU---UCG- -5'
6681 5' -52.7 NC_001847.1 + 2546 0.66 0.964592
Target:  5'- aCCGcUGCUCuccggcgggcugucuUCGGCGCGg--GCGccuGCg -3'
miRNA:   3'- cGGC-ACGAG---------------AGCCGCGCaaaUGUu--CG- -5'
6681 5' -52.7 NC_001847.1 + 3244 0.75 0.613749
Target:  5'- cGCCGUGCUCgccggCGGCaggggcgccggcgccGCGcggccgGCGAGCa -3'
miRNA:   3'- -CGGCACGAGa----GCCG---------------CGCaaa---UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 3508 0.66 0.977845
Target:  5'- cGCCGUcacGCUCcCGGUGauga-ACGAGCu -3'
miRNA:   3'- -CGGCA---CGAGaGCCGCgcaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 3810 0.67 0.947474
Target:  5'- gGCCGggcgGCgg-CGGCGCGcUgcCGGGCc -3'
miRNA:   3'- -CGGCa---CGagaGCCGCGCaAauGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 3900 0.66 0.966578
Target:  5'- aGCCGuUGCgcgCggUGGCGCGgacGCAcGCa -3'
miRNA:   3'- -CGGC-ACGa--Ga-GCCGCGCaaaUGUuCG- -5'
6681 5' -52.7 NC_001847.1 + 5206 0.67 0.95177
Target:  5'- cGCCGgcuCUCUCGcCGCGgcgGCcGGCg -3'
miRNA:   3'- -CGGCac-GAGAGCcGCGCaaaUGuUCG- -5'
6681 5' -52.7 NC_001847.1 + 5890 0.66 0.975337
Target:  5'- cGCCccUGC-CUCGcGCGCGUUgguCuGGCa -3'
miRNA:   3'- -CGGc-ACGaGAGC-CGCGCAAau-GuUCG- -5'
6681 5' -52.7 NC_001847.1 + 7254 0.67 0.955824
Target:  5'- gGCUGUGCgggCgCGGCGgGg--GCAcGCg -3'
miRNA:   3'- -CGGCACGa--GaGCCGCgCaaaUGUuCG- -5'
6681 5' -52.7 NC_001847.1 + 7840 0.67 0.95964
Target:  5'- cGCCGUGuCUC-CGGCaccgccggugGCGccUGCAgaGGCg -3'
miRNA:   3'- -CGGCAC-GAGaGCCG----------CGCaaAUGU--UCG- -5'
6681 5' -52.7 NC_001847.1 + 8474 0.66 0.975337
Target:  5'- gGCCGgggGCggcgCUCGGC-CGgggGCGGGg -3'
miRNA:   3'- -CGGCa--CGa---GAGCCGcGCaaaUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 8478 0.67 0.942932
Target:  5'- cCCG-GCgucCUCGuCGCGUUUGgGGGCg -3'
miRNA:   3'- cGGCaCGa--GAGCcGCGCAAAUgUUCG- -5'
6681 5' -52.7 NC_001847.1 + 9907 0.69 0.910428
Target:  5'- -gCGUGgUCUCGGgccccgccccCGCGg--ACGAGCa -3'
miRNA:   3'- cgGCACgAGAGCC----------GCGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 10591 0.69 0.904134
Target:  5'- cGCCGcgcUGCUCUCGGCagacgcagacGCGguagUggGCg -3'
miRNA:   3'- -CGGC---ACGAGAGCCG----------CGCaaauGuuCG- -5'
6681 5' -52.7 NC_001847.1 + 12685 0.67 0.95964
Target:  5'- aGCUGcacUGCgcgUCGGCG-GggUGCAGGCa -3'
miRNA:   3'- -CGGC---ACGag-AGCCGCgCaaAUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 13110 0.67 0.955824
Target:  5'- cGCCGUcCUcCUCGGCuGCGgccGCGaucAGCa -3'
miRNA:   3'- -CGGCAcGA-GAGCCG-CGCaaaUGU---UCG- -5'
6681 5' -52.7 NC_001847.1 + 13655 0.7 0.875051
Target:  5'- cGCUG-GUUCUcCGGCGCGguguggaaccACGAGCc -3'
miRNA:   3'- -CGGCaCGAGA-GCCGCGCaaa-------UGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.