miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 5' -52.7 NC_001847.1 + 66163 0.77 0.477364
Target:  5'- -aCGUGCUCUCGGC-CGUgcccgcGCGGGCc -3'
miRNA:   3'- cgGCACGAGAGCCGcGCAaa----UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 90341 0.73 0.713843
Target:  5'- cGCgGUGCcgcgCUCGGCGC-UUU-CGGGCg -3'
miRNA:   3'- -CGgCACGa---GAGCCGCGcAAAuGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 73707 0.73 0.693266
Target:  5'- cGCCGcGCcCggCGGCGCGgccGCGGGCg -3'
miRNA:   3'- -CGGCaCGaGa-GCCGCGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 32695 0.73 0.69223
Target:  5'- aGCUGUGCggcgccgUCUCGGCGCGcuucaugGAGCg -3'
miRNA:   3'- -CGGCACG-------AGAGCCGCGCaaaug--UUCG- -5'
6681 5' -52.7 NC_001847.1 + 31926 0.74 0.682891
Target:  5'- gGCCGcgGCUCcgCGGCGgGUaagcggACGAGCc -3'
miRNA:   3'- -CGGCa-CGAGa-GCCGCgCAaa----UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 96896 0.74 0.670385
Target:  5'- cGCCGUGCUCgcgcgggacuggCGGCcGCGU--AgAGGCg -3'
miRNA:   3'- -CGGCACGAGa-----------GCCG-CGCAaaUgUUCG- -5'
6681 5' -52.7 NC_001847.1 + 26529 0.74 0.66202
Target:  5'- cGCCGUcccccggagcacGUUUUCGGCGCGcgUGCGGuGCa -3'
miRNA:   3'- -CGGCA------------CGAGAGCCGCGCaaAUGUU-CG- -5'
6681 5' -52.7 NC_001847.1 + 30155 0.74 0.641048
Target:  5'- cGCCGUGCgccCUgGGUGCGUggcGCucGGCg -3'
miRNA:   3'- -CGGCACGa--GAgCCGCGCAaa-UGu-UCG- -5'
6681 5' -52.7 NC_001847.1 + 133584 0.74 0.630546
Target:  5'- cGCCGUGCUggccucgCGGCGCGUcuucggccCGGGCg -3'
miRNA:   3'- -CGGCACGAga-----GCCGCGCAaau-----GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 106057 0.75 0.613749
Target:  5'- cGCCGUGCUCgccggCGGCaggggcgccggcgccGCGcggccgGCGAGCa -3'
miRNA:   3'- -CGGCACGAGa----GCCG---------------CGCaaa---UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 77717 0.75 0.609554
Target:  5'- cGCUgGUGCgcgCUUGGCGCGcgUGCGAGg -3'
miRNA:   3'- -CGG-CACGa--GAGCCGCGCaaAUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 97827 0.75 0.588633
Target:  5'- cGCUGUGC--UCGGCGCGc--GCGGGCu -3'
miRNA:   3'- -CGGCACGagAGCCGCGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 130482 0.75 0.578219
Target:  5'- gGCCcUGCUCgacgCGGCGCGU---CGGGCu -3'
miRNA:   3'- -CGGcACGAGa---GCCGCGCAaauGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 131869 0.76 0.567846
Target:  5'- cGCCGUGCUCgcCGGCcGCGcg-GCGccGGCg -3'
miRNA:   3'- -CGGCACGAGa-GCCG-CGCaaaUGU--UCG- -5'
6681 5' -52.7 NC_001847.1 + 132025 0.76 0.547248
Target:  5'- cCCgGUGCUCUCGGCcGCG---GCGGGCc -3'
miRNA:   3'- cGG-CACGAGAGCCG-CGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 98599 0.76 0.526892
Target:  5'- cGCCGgcGCUUgggCGGCGCGgcaccccGCAAGCg -3'
miRNA:   3'- -CGGCa-CGAGa--GCCGCGCaaa----UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 134110 0.77 0.496916
Target:  5'- cGCuCGUGCUgCUgCGGCGCGcc-GCGGGCg -3'
miRNA:   3'- -CG-GCACGA-GA-GCCGCGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 88830 0.77 0.487093
Target:  5'- gGCCGUGCUgcgCUCGGCGCuacgGCuGGCc -3'
miRNA:   3'- -CGGCACGA---GAGCCGCGcaaaUGuUCG- -5'
6681 5' -52.7 NC_001847.1 + 132118 0.77 0.477364
Target:  5'- cGCCGaGCUgCUCGGCGCGgcccGCGAcGCg -3'
miRNA:   3'- -CGGCaCGA-GAGCCGCGCaaa-UGUU-CG- -5'
6681 5' -52.7 NC_001847.1 + 121145 1.13 0.002939
Target:  5'- uGCCGUGCUCUCGGCGCGUUUACAAGCc -3'
miRNA:   3'- -CGGCACGAGAGCCGCGCAAAUGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.