miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 121258 1.07 0.000897
Target:  5'- gUGGCACUGGGCUCCCGGCCAAAGGCGc -3'
miRNA:   3'- -ACCGUGACCCGAGGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 111279 0.8 0.085544
Target:  5'- cGGCGCcgggccggGGGCggcgCUCGGCCGGGGGCGg -3'
miRNA:   3'- aCCGUGa-------CCCGa---GGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 79572 0.8 0.083345
Target:  5'- gGGCGCcGGGCUCgCGGCCucuucGGGCGg -3'
miRNA:   3'- aCCGUGaCCCGAGgGCCGGuu---UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 8466 0.8 0.085544
Target:  5'- cGGCGCcgggccggGGGCggcgCUCGGCCGGGGGCGg -3'
miRNA:   3'- aCCGUGa-------CCCGa---GGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 71080 0.79 0.094907
Target:  5'- cGGCGCUcGGCcggCgCGGCCAGAGGCGa -3'
miRNA:   3'- aCCGUGAcCCGa--GgGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 129460 0.79 0.106323
Target:  5'- cGGguCUGGGCggcCCCGGCCGGcccaccuucgcgccuGGGCGg -3'
miRNA:   3'- aCCguGACCCGa--GGGCCGGUU---------------UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 26647 0.79 0.106323
Target:  5'- cGGguCUGGGCggcCCCGGCCGGcccaccuucgcgccuGGGCGg -3'
miRNA:   3'- aCCguGACCCGa--GGGCCGGUU---------------UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 66680 0.77 0.139316
Target:  5'- -cGCGCggcgGGGC-CCCGGCCGcGGGCGc -3'
miRNA:   3'- acCGUGa---CCCGaGGGCCGGUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 125081 0.77 0.125886
Target:  5'- gGGCGCUGGGCccgCgCGGCCAAGaugucguucgcGGCGg -3'
miRNA:   3'- aCCGUGACCCGa--GgGCCGGUUU-----------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 116136 0.77 0.132444
Target:  5'- gGGCGCUgGGGCgCgCGGCCcGAGGCGc -3'
miRNA:   3'- aCCGUGA-CCCGaGgGCCGGuUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 122407 0.77 0.131108
Target:  5'- aGGCGCUGGGCcgcaCCCGGCCcuccaaaauccuGGGCa -3'
miRNA:   3'- aCCGUGACCCGa---GGGCCGGuu----------UCCGc -5'
6682 3' -61.7 NC_001847.1 + 8595 0.76 0.161933
Target:  5'- aGGCcccGCcagGGGCggcgCUCGGCCGGGGGCGg -3'
miRNA:   3'- aCCG---UGa--CCCGa---GGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 35967 0.76 0.166011
Target:  5'- cGGCGCUGcuguGGCUCCCGccggcuggcGCCAcAAGGCGc -3'
miRNA:   3'- aCCGUGAC----CCGAGGGC---------CGGU-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 82460 0.76 0.17018
Target:  5'- aGGCGCggcGGGCccggcCCCGGCCAcggggccgccgAAGGCGu -3'
miRNA:   3'- aCCGUGa--CCCGa----GGGCCGGU-----------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 111408 0.76 0.161933
Target:  5'- aGGCcccGCcagGGGCggcgCUCGGCCGGGGGCGg -3'
miRNA:   3'- aCCG---UGa--CCCGa---GGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 32226 0.75 0.174442
Target:  5'- gGGCGCgGGGCg-CCGGacCCAGGGGCGg -3'
miRNA:   3'- aCCGUGaCCCGagGGCC--GGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 88886 0.75 0.192455
Target:  5'- cGGCgGCgGcGGCUCCC-GCCGGGGGCGg -3'
miRNA:   3'- aCCG-UGaC-CCGAGGGcCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 135039 0.75 0.174442
Target:  5'- gGGCGCgGGGCg-CCGGacCCAGGGGCGg -3'
miRNA:   3'- aCCGUGaCCCGagGGCC--GGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 85152 0.74 0.227904
Target:  5'- gGGCGCgcGGGCUCCUcucGCgGAGGGCGu -3'
miRNA:   3'- aCCGUGa-CCCGAGGGc--CGgUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 102955 0.74 0.207016
Target:  5'- gGGC-CUcGGGC-CCCGGCCGGGGGg- -3'
miRNA:   3'- aCCGuGA-CCCGaGGGCCGGUUUCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.