Results 1 - 20 of 302 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 3' | -61.7 | NC_001847.1 | + | 70 | 0.69 | 0.443159 |
Target: 5'- cGGCGCggcGGGC-CCgGGCCcgcucuGGGCu -3' miRNA: 3'- aCCGUGa--CCCGaGGgCCGGuu----UCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 142 | 0.74 | 0.207016 |
Target: 5'- gGGC-CUcGGGC-CCCGGCCGGGGGg- -3' miRNA: 3'- aCCGuGA-CCCGaGGGCCGGUUUCCgc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 584 | 0.66 | 0.575652 |
Target: 5'- cGGCGCcGGG-UCCUGGCCcuccGCGg -3' miRNA: 3'- aCCGUGaCCCgAGGGCCGGuuucCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 886 | 0.66 | 0.595532 |
Target: 5'- cGGCccGCgccgGGGCcgCCgCGGCCGccGGCc -3' miRNA: 3'- aCCG--UGa---CCCGa-GG-GCCGGUuuCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 1090 | 0.67 | 0.555926 |
Target: 5'- --aCGCcGGGCgCCgCGGCCGcGGGCGg -3' miRNA: 3'- accGUGaCCCGaGG-GCCGGUuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 1151 | 0.66 | 0.584582 |
Target: 5'- cGGCGC-GcGGCUCCggcagcgCGGCCGcgcagAAGGCc -3' miRNA: 3'- aCCGUGaC-CCGAGG-------GCCGGU-----UUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 2106 | 0.68 | 0.458394 |
Target: 5'- cGGCGgcGGGCcgcgaUCUCGGCCAgcgccucggggucgAAGGCGa -3' miRNA: 3'- aCCGUgaCCCG-----AGGGCCGGU--------------UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 2236 | 0.68 | 0.461112 |
Target: 5'- cGGCGCUGGGCg-CgGGCguGugguaguccccGGGCGg -3' miRNA: 3'- aCCGUGACCCGagGgCCGguU-----------UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 2312 | 0.67 | 0.526726 |
Target: 5'- cGGCA-UGGGC-CCCaGCaCGcGGGCGg -3' miRNA: 3'- aCCGUgACCCGaGGGcCG-GUuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 3088 | 0.66 | 0.615514 |
Target: 5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3' miRNA: 3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 3336 | 0.68 | 0.470231 |
Target: 5'- cGGCGCcGGcCUCCggguaGGCCAugGGGGCGu -3' miRNA: 3'- aCCGUGaCCcGAGGg----CCGGU--UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 3812 | 0.69 | 0.452087 |
Target: 5'- cGGCACgGGGCg-UCGGCCGcgagcguGGCGu -3' miRNA: 3'- aCCGUGaCCCGagGGCCGGUuu-----CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 3823 | 0.67 | 0.565766 |
Target: 5'- cGGCGCgcugccGGGCcacgCCUcGCCAGaAGGCGu -3' miRNA: 3'- aCCGUGa-----CCCGa---GGGcCGGUU-UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 3940 | 0.66 | 0.605514 |
Target: 5'- cUGGCGCcgcggcgggggGGGCgccgUCuCCGGCggCGAGGGCGc -3' miRNA: 3'- -ACCGUGa----------CCCG----AG-GGCCG--GUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 7728 | 0.72 | 0.275014 |
Target: 5'- aGGCGCaGGGCg-CgGGCgCGGAGGCGg -3' miRNA: 3'- aCCGUGaCCCGagGgCCG-GUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 8122 | 0.67 | 0.555926 |
Target: 5'- aGGCGCgGGGC-CCCaggGGC---GGGCGg -3' miRNA: 3'- aCCGUGaCCCGaGGG---CCGguuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 8296 | 0.69 | 0.416987 |
Target: 5'- cGGCA--GGGCUCCCcggggGGCCAGGcugucGGCa -3' miRNA: 3'- aCCGUgaCCCGAGGG-----CCGGUUU-----CCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 8466 | 0.8 | 0.085544 |
Target: 5'- cGGCGCcgggccggGGGCggcgCUCGGCCGGGGGCGg -3' miRNA: 3'- aCCGUGa-------CCCGa---GGGCCGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 8595 | 0.76 | 0.161933 |
Target: 5'- aGGCcccGCcagGGGCggcgCUCGGCCGGGGGCGg -3' miRNA: 3'- aCCG---UGa--CCCGa---GGGCCGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 10564 | 0.67 | 0.5364 |
Target: 5'- cGGCGCcGGGC-CCgGcGCCGgcGGCc -3' miRNA: 3'- aCCGUGaCCCGaGGgC-CGGUuuCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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