miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 70 0.69 0.443159
Target:  5'- cGGCGCggcGGGC-CCgGGCCcgcucuGGGCu -3'
miRNA:   3'- aCCGUGa--CCCGaGGgCCGGuu----UCCGc -5'
6682 3' -61.7 NC_001847.1 + 142 0.74 0.207016
Target:  5'- gGGC-CUcGGGC-CCCGGCCGGGGGg- -3'
miRNA:   3'- aCCGuGA-CCCGaGGGCCGGUUUCCgc -5'
6682 3' -61.7 NC_001847.1 + 584 0.66 0.575652
Target:  5'- cGGCGCcGGG-UCCUGGCCcuccGCGg -3'
miRNA:   3'- aCCGUGaCCCgAGGGCCGGuuucCGC- -5'
6682 3' -61.7 NC_001847.1 + 886 0.66 0.595532
Target:  5'- cGGCccGCgccgGGGCcgCCgCGGCCGccGGCc -3'
miRNA:   3'- aCCG--UGa---CCCGa-GG-GCCGGUuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 1090 0.67 0.555926
Target:  5'- --aCGCcGGGCgCCgCGGCCGcGGGCGg -3'
miRNA:   3'- accGUGaCCCGaGG-GCCGGUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 1151 0.66 0.584582
Target:  5'- cGGCGC-GcGGCUCCggcagcgCGGCCGcgcagAAGGCc -3'
miRNA:   3'- aCCGUGaC-CCGAGG-------GCCGGU-----UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 2106 0.68 0.458394
Target:  5'- cGGCGgcGGGCcgcgaUCUCGGCCAgcgccucggggucgAAGGCGa -3'
miRNA:   3'- aCCGUgaCCCG-----AGGGCCGGU--------------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 2236 0.68 0.461112
Target:  5'- cGGCGCUGGGCg-CgGGCguGugguaguccccGGGCGg -3'
miRNA:   3'- aCCGUGACCCGagGgCCGguU-----------UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 2312 0.67 0.526726
Target:  5'- cGGCA-UGGGC-CCCaGCaCGcGGGCGg -3'
miRNA:   3'- aCCGUgACCCGaGGGcCG-GUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 3088 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 3336 0.68 0.470231
Target:  5'- cGGCGCcGGcCUCCggguaGGCCAugGGGGCGu -3'
miRNA:   3'- aCCGUGaCCcGAGGg----CCGGU--UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 3812 0.69 0.452087
Target:  5'- cGGCACgGGGCg-UCGGCCGcgagcguGGCGu -3'
miRNA:   3'- aCCGUGaCCCGagGGCCGGUuu-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 3823 0.67 0.565766
Target:  5'- cGGCGCgcugccGGGCcacgCCUcGCCAGaAGGCGu -3'
miRNA:   3'- aCCGUGa-----CCCGa---GGGcCGGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 3940 0.66 0.605514
Target:  5'- cUGGCGCcgcggcgggggGGGCgccgUCuCCGGCggCGAGGGCGc -3'
miRNA:   3'- -ACCGUGa----------CCCG----AG-GGCCG--GUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 7728 0.72 0.275014
Target:  5'- aGGCGCaGGGCg-CgGGCgCGGAGGCGg -3'
miRNA:   3'- aCCGUGaCCCGagGgCCG-GUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 8122 0.67 0.555926
Target:  5'- aGGCGCgGGGC-CCCaggGGC---GGGCGg -3'
miRNA:   3'- aCCGUGaCCCGaGGG---CCGguuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 8296 0.69 0.416987
Target:  5'- cGGCA--GGGCUCCCcggggGGCCAGGcugucGGCa -3'
miRNA:   3'- aCCGUgaCCCGAGGG-----CCGGUUU-----CCGc -5'
6682 3' -61.7 NC_001847.1 + 8466 0.8 0.085544
Target:  5'- cGGCGCcgggccggGGGCggcgCUCGGCCGGGGGCGg -3'
miRNA:   3'- aCCGUGa-------CCCGa---GGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 8595 0.76 0.161933
Target:  5'- aGGCcccGCcagGGGCggcgCUCGGCCGGGGGCGg -3'
miRNA:   3'- aCCG---UGa--CCCGa---GGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 10564 0.67 0.5364
Target:  5'- cGGCGCcGGGC-CCgGcGCCGgcGGCc -3'
miRNA:   3'- aCCGUGaCCCGaGGgC-CGGUuuCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.