miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 10627 0.68 0.497179
Target:  5'- cUGGCGCUGguccuccGGCUCCUcGCC--GGGCu -3'
miRNA:   3'- -ACCGUGAC-------CCGAGGGcCGGuuUCCGc -5'
6682 3' -61.7 NC_001847.1 + 11270 0.7 0.38117
Target:  5'- gGGCGCUGGGCuUCCUGaauuaCCAAguacgcgcgaagauGGGCGc -3'
miRNA:   3'- aCCGUGACCCG-AGGGCc----GGUU--------------UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 11790 0.67 0.546135
Target:  5'- gGGCAgUGGcGCUuucgaCCCGGCgCGu-GGCGu -3'
miRNA:   3'- aCCGUgACC-CGA-----GGGCCG-GUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 12489 0.66 0.624526
Target:  5'- gUGGCgGCggGGGCggccaagaaCCCgGGCCAgacgacgAAGGCGa -3'
miRNA:   3'- -ACCG-UGa-CCCGa--------GGG-CCGGU-------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 12937 0.73 0.256491
Target:  5'- gGGCACccGGC-CCCGGCUAGuguGGCGg -3'
miRNA:   3'- aCCGUGacCCGaGGGCCGGUUu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 12982 0.68 0.498121
Target:  5'- aUGGCGCUGcaguaCCGGCUggGGGUGg -3'
miRNA:   3'- -ACCGUGACccgagGGCCGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 13308 0.68 0.498121
Target:  5'- gGGCGCcGGGCUgCaguCGGCCGAGcuguaccugcuGGCGc -3'
miRNA:   3'- aCCGUGaCCCGAgG---GCCGGUUU-----------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 13319 0.67 0.526726
Target:  5'- aGGCAgacGGGCU-CCGGCac-GGGCGg -3'
miRNA:   3'- aCCGUga-CCCGAgGGCCGguuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 13351 0.69 0.434331
Target:  5'- cGGCACUcaGaGGCgCCCGGCUAcacGGCa -3'
miRNA:   3'- aCCGUGA--C-CCGaGGGCCGGUuu-CCGc -5'
6682 3' -61.7 NC_001847.1 + 14132 0.73 0.244718
Target:  5'- gGGCGaUGGGCggggCCCGcGCCu-GGGCGg -3'
miRNA:   3'- aCCGUgACCCGa---GGGC-CGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 14164 0.69 0.452087
Target:  5'- cGGC-CgGGGCggCCGcGCUAAAGGCa -3'
miRNA:   3'- aCCGuGaCCCGagGGC-CGGUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 14206 0.74 0.217246
Target:  5'- cGGgGCUGGcGgUCaggCCGGCCGGGGGCGu -3'
miRNA:   3'- aCCgUGACC-CgAG---GGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 14446 0.66 0.605514
Target:  5'- cGGCGCcgGGGUgcgcggCCgCGGCCucuGGGUc -3'
miRNA:   3'- aCCGUGa-CCCGa-----GG-GCCGGuu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 15544 0.66 0.615514
Target:  5'- cUGGCGCcGGuGCgcgCgCGGCCGucGGGCc -3'
miRNA:   3'- -ACCGUGaCC-CGa--GgGCCGGUu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 16671 0.66 0.585576
Target:  5'- aGGCGCgcccGGGC-CuuGcGCCGcAGGCa -3'
miRNA:   3'- aCCGUGa---CCCGaGggC-CGGUuUCCGc -5'
6682 3' -61.7 NC_001847.1 + 16764 0.67 0.546135
Target:  5'- aGG-ACgGGGCUUCCgauuaGGCCGggcGAGGCGu -3'
miRNA:   3'- aCCgUGaCCCGAGGG-----CCGGU---UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 17791 0.7 0.383601
Target:  5'- cGGCg--GGGCUuugCUCGGCCGcggGGGGCGa -3'
miRNA:   3'- aCCGugaCCCGA---GGGCCGGU---UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 18221 0.7 0.352039
Target:  5'- gGGCugUGcGGCUCUCGGCgCGugcucgcguGGCGc -3'
miRNA:   3'- aCCGugAC-CCGAGGGCCG-GUuu-------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 21635 0.7 0.390958
Target:  5'- cGGCGC-GGGCcgcgCCCGGgCGcgaccggAGGGCGa -3'
miRNA:   3'- aCCGUGaCCCGa---GGGCCgGU-------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 21731 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.