Results 41 - 60 of 302 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 3' | -61.7 | NC_001847.1 | + | 21772 | 0.72 | 0.287948 |
Target: 5'- cGGCGCcGGGCccggCgCCGGCC--GGGCGc -3' miRNA: 3'- aCCGUGaCCCGa---G-GGCCGGuuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 21959 | 0.67 | 0.5364 |
Target: 5'- cGGCACcgggggGGGCUUUCGGC----GGCGg -3' miRNA: 3'- aCCGUGa-----CCCGAGGGCCGguuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 22582 | 0.67 | 0.546135 |
Target: 5'- gGGCGCcccgGGGCagggcccgCCCGGUCGcguGGCa -3' miRNA: 3'- aCCGUGa---CCCGa-------GGGCCGGUuu-CCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 24193 | 0.69 | 0.408475 |
Target: 5'- gUGGCGCUGguGGC-CaugaCGGCCAGgagcAGGCGc -3' miRNA: 3'- -ACCGUGAC--CCGaGg---GCCGGUU----UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 24937 | 0.7 | 0.400072 |
Target: 5'- aGGUacagcaGCUGGGCggcuugCCCGGCagguGGCGc -3' miRNA: 3'- aCCG------UGACCCGa-----GGGCCGguuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 25416 | 0.66 | 0.603516 |
Target: 5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3' miRNA: 3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 26482 | 0.66 | 0.575652 |
Target: 5'- cUGGUAg-GGGCgggCCUGGUgcAAGGCGg -3' miRNA: 3'- -ACCGUgaCCCGa--GGGCCGguUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 26509 | 0.66 | 0.625527 |
Target: 5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3' miRNA: 3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 26647 | 0.79 | 0.106323 |
Target: 5'- cGGguCUGGGCggcCCCGGCCGGcccaccuucgcgccuGGGCGg -3' miRNA: 3'- aCCguGACCCGa--GGGCCGGUU---------------UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 27698 | 0.66 | 0.612513 |
Target: 5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3' miRNA: 3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 27943 | 0.67 | 0.533491 |
Target: 5'- aGGC-CUGGGCcgcggcgcgcgcgcUCgCGGUCGcggugGAGGCGg -3' miRNA: 3'- aCCGuGACCCG--------------AGgGCCGGU-----UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29064 | 0.68 | 0.470231 |
Target: 5'- aGGCGgUGGGCUgCgUGGCgGuggcGGGCGg -3' miRNA: 3'- aCCGUgACCCGA-GgGCCGgUu---UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29076 | 0.68 | 0.479441 |
Target: 5'- cGGCGCcGGcGC-CCCuGCCGccGGCGa -3' miRNA: 3'- aCCGUGaCC-CGaGGGcCGGUuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29197 | 0.72 | 0.268723 |
Target: 5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3' miRNA: 3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29370 | 0.68 | 0.488739 |
Target: 5'- cGGCGCUGcgcgccgaggcGGC-CgCCGcGCUGGAGGCGg -3' miRNA: 3'- aCCGUGAC-----------CCGaG-GGC-CGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29490 | 0.73 | 0.262549 |
Target: 5'- cGGCAC---GCUCuCCGGCCGcGGGCGg -3' miRNA: 3'- aCCGUGaccCGAG-GGCCGGUuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29526 | 0.67 | 0.554944 |
Target: 5'- cGGCgcgGCUGGcggccgcGCUCgCGGCCcuGGAGGCc -3' miRNA: 3'- aCCG---UGACC-------CGAGgGCCGG--UUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29578 | 0.69 | 0.434331 |
Target: 5'- cGGCGCcGGcGCcgccgcgCCgGGCCGGGGGCc -3' miRNA: 3'- aCCGUGaCC-CGa------GGgCCGGUUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 29643 | 0.67 | 0.526726 |
Target: 5'- gGGCGCcgcGGGCggaCCCGGaggaCGgguccGAGGCGg -3' miRNA: 3'- aCCGUGa--CCCGa--GGGCCg---GU-----UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 30021 | 0.66 | 0.575652 |
Target: 5'- -aGCGCUGGccGCgucuauggCCgCGGCCGuGGGCGa -3' miRNA: 3'- acCGUGACC--CGa-------GG-GCCGGUuUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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