miRNA display CGI


Results 41 - 60 of 302 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 21772 0.72 0.287948
Target:  5'- cGGCGCcGGGCccggCgCCGGCC--GGGCGc -3'
miRNA:   3'- aCCGUGaCCCGa---G-GGCCGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 21959 0.67 0.5364
Target:  5'- cGGCACcgggggGGGCUUUCGGC----GGCGg -3'
miRNA:   3'- aCCGUGa-----CCCGAGGGCCGguuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 22582 0.67 0.546135
Target:  5'- gGGCGCcccgGGGCagggcccgCCCGGUCGcguGGCa -3'
miRNA:   3'- aCCGUGa---CCCGa-------GGGCCGGUuu-CCGc -5'
6682 3' -61.7 NC_001847.1 + 24193 0.69 0.408475
Target:  5'- gUGGCGCUGguGGC-CaugaCGGCCAGgagcAGGCGc -3'
miRNA:   3'- -ACCGUGAC--CCGaGg---GCCGGUU----UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 24937 0.7 0.400072
Target:  5'- aGGUacagcaGCUGGGCggcuugCCCGGCagguGGCGc -3'
miRNA:   3'- aCCG------UGACCCGa-----GGGCCGguuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 25416 0.66 0.603516
Target:  5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3'
miRNA:   3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 26482 0.66 0.575652
Target:  5'- cUGGUAg-GGGCgggCCUGGUgcAAGGCGg -3'
miRNA:   3'- -ACCGUgaCCCGa--GGGCCGguUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 26509 0.66 0.625527
Target:  5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3'
miRNA:   3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 26647 0.79 0.106323
Target:  5'- cGGguCUGGGCggcCCCGGCCGGcccaccuucgcgccuGGGCGg -3'
miRNA:   3'- aCCguGACCCGa--GGGCCGGUU---------------UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 27698 0.66 0.612513
Target:  5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3'
miRNA:   3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 27943 0.67 0.533491
Target:  5'- aGGC-CUGGGCcgcggcgcgcgcgcUCgCGGUCGcggugGAGGCGg -3'
miRNA:   3'- aCCGuGACCCG--------------AGgGCCGGU-----UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29064 0.68 0.470231
Target:  5'- aGGCGgUGGGCUgCgUGGCgGuggcGGGCGg -3'
miRNA:   3'- aCCGUgACCCGA-GgGCCGgUu---UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29076 0.68 0.479441
Target:  5'- cGGCGCcGGcGC-CCCuGCCGccGGCGa -3'
miRNA:   3'- aCCGUGaCC-CGaGGGcCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29197 0.72 0.268723
Target:  5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29370 0.68 0.488739
Target:  5'- cGGCGCUGcgcgccgaggcGGC-CgCCGcGCUGGAGGCGg -3'
miRNA:   3'- aCCGUGAC-----------CCGaG-GGC-CGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29490 0.73 0.262549
Target:  5'- cGGCAC---GCUCuCCGGCCGcGGGCGg -3'
miRNA:   3'- aCCGUGaccCGAG-GGCCGGUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29526 0.67 0.554944
Target:  5'- cGGCgcgGCUGGcggccgcGCUCgCGGCCcuGGAGGCc -3'
miRNA:   3'- aCCG---UGACC-------CGAGgGCCGG--UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 29578 0.69 0.434331
Target:  5'- cGGCGCcGGcGCcgccgcgCCgGGCCGGGGGCc -3'
miRNA:   3'- aCCGUGaCC-CGa------GGgCCGGUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 29643 0.67 0.526726
Target:  5'- gGGCGCcgcGGGCggaCCCGGaggaCGgguccGAGGCGg -3'
miRNA:   3'- aCCGUGa--CCCGa--GGGCCg---GU-----UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 30021 0.66 0.575652
Target:  5'- -aGCGCUGGccGCgucuauggCCgCGGCCGuGGGCGa -3'
miRNA:   3'- acCGUGACC--CGa-------GG-GCCGGUuUCCGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.