miRNA display CGI


Results 41 - 60 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 68447 0.66 0.615514
Target:  5'- aUGGCGCgGGaGCgCCCG-CUguGGAGGCGa -3'
miRNA:   3'- -ACCGUGaCC-CGaGGGCcGG--UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 57773 0.66 0.585576
Target:  5'- gGGCuGCUGGuGCUCgCCGGgCu--GGUGg -3'
miRNA:   3'- aCCG-UGACC-CGAG-GGCCgGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 31094 0.66 0.585576
Target:  5'- cGGCGCUGGGg-CCgGGCagcgcGGUGg -3'
miRNA:   3'- aCCGUGACCCgaGGgCCGguuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 12489 0.66 0.624526
Target:  5'- gUGGCgGCggGGGCggccaagaaCCCgGGCCAgacgacgAAGGCGa -3'
miRNA:   3'- -ACCG-UGa-CCCGa--------GGG-CCGGU-------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 130511 0.66 0.612513
Target:  5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3'
miRNA:   3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 3088 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 100598 0.66 0.615514
Target:  5'- cGGC-CUGuGGCcccaagcgCCCGGCgGgcGGCGc -3'
miRNA:   3'- aCCGuGAC-CCGa-------GGGCCGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 103397 0.66 0.575652
Target:  5'- cGGCGCcGGG-UCCUGGCCcuccGCGg -3'
miRNA:   3'- aCCGUGaCCCgAGGGCCGGuuucCGC- -5'
6682 3' -61.7 NC_001847.1 + 48839 0.66 0.615514
Target:  5'- -cGCGCggGGGCgCCuCGGCCGcgcGGCGc -3'
miRNA:   3'- acCGUGa-CCCGaGG-GCCGGUuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 15544 0.66 0.615514
Target:  5'- cUGGCGCcGGuGCgcgCgCGGCCGucGGGCc -3'
miRNA:   3'- -ACCGUGaCC-CGa--GgGCCGGUu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 134894 0.66 0.605514
Target:  5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3'
miRNA:   3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 64334 0.66 0.585576
Target:  5'- cGGCGCUcGGCggauccccUCCCGGCCccgccGCGa -3'
miRNA:   3'- aCCGUGAcCCG--------AGGGCCGGuuuc-CGC- -5'
6682 3' -61.7 NC_001847.1 + 124544 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 76401 0.66 0.625527
Target:  5'- gGGCGCcGGGggCCgCGGC-GGGGGCa -3'
miRNA:   3'- aCCGUGaCCCgaGG-GCCGgUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 105901 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 93596 0.66 0.625527
Target:  5'- cGGCGCUGGaGaagaUCaaGGCCcgcGGCGg -3'
miRNA:   3'- aCCGUGACC-Cg---AGggCCGGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 16671 0.66 0.585576
Target:  5'- aGGCGCgcccGGGC-CuuGcGCCGcAGGCa -3'
miRNA:   3'- aCCGUGa---CCCGaGggC-CGGUuUCCGc -5'
6682 3' -61.7 NC_001847.1 + 21731 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 34790 0.66 0.625527
Target:  5'- cGGCGC-GcGGCUacgacCCgCGGCCGcuGGCGc -3'
miRNA:   3'- aCCGUGaC-CCGA-----GG-GCCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 129322 0.66 0.625527
Target:  5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3'
miRNA:   3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.