miRNA display CGI


Results 41 - 60 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 29197 0.72 0.268723
Target:  5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 132010 0.72 0.268723
Target:  5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 31400 0.72 0.281422
Target:  5'- gGGCGCgggcucGGGCuUCCCGGCgCcggcGGGCGg -3'
miRNA:   3'- aCCGUGa-----CCCG-AGGGCCG-Guu--UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134924 0.72 0.275014
Target:  5'- aGGCccggGCUcGGGCcCCCGggcGCCGGGGGCGg -3'
miRNA:   3'- aCCG----UGA-CCCGaGGGC---CGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134213 0.72 0.281422
Target:  5'- gGGCGCgggcucGGGCuUCCCGGCgCcggcGGGCGg -3'
miRNA:   3'- aCCGUGa-----CCCG-AGGGCCG-Guu--UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 124585 0.72 0.287948
Target:  5'- cGGCGCcGGGCccggCgCCGGCC--GGGCGc -3'
miRNA:   3'- aCCGUGaCCCGa---G-GGCCGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 103783 0.72 0.294593
Target:  5'- cGGCACccggccggcgGGGCUUCCGccGCCGgcGGCGg -3'
miRNA:   3'- aCCGUGa---------CCCGAGGGC--CGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 72788 0.72 0.301356
Target:  5'- cUGcGCACgGGGCUgcacCCCGGCUucGGGCu -3'
miRNA:   3'- -AC-CGUGaCCCGA----GGGCCGGuuUCCGc -5'
6682 3' -61.7 NC_001847.1 + 21772 0.72 0.287948
Target:  5'- cGGCGCcGGGCccggCgCCGGCC--GGGCGc -3'
miRNA:   3'- aCCGUGaCCCGa---G-GGCCGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 132545 0.71 0.344442
Target:  5'- cGGCGCggcGGGCUCgcgugCGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa--CCCGAGg----GCCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 123632 0.71 0.344442
Target:  5'- cGGC-CgGGGCggcgCCCuuGGCUGAAGGCGc -3'
miRNA:   3'- aCCGuGaCCCGa---GGG--CCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 49050 0.71 0.329602
Target:  5'- gUGGCGCgcaGCUCaCGGCCGcGGGCGg -3'
miRNA:   3'- -ACCGUGaccCGAGgGCCGGUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 118951 0.71 0.342185
Target:  5'- aUGGCGCgggccaguuccgauUcGGGgUCCgCGGCCAAcgGGGCGg -3'
miRNA:   3'- -ACCGUG--------------A-CCCgAGG-GCCGGUU--UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 30449 0.71 0.329602
Target:  5'- cGGCGCUGGGCaaCCGGCUGcugcuGAGcGCc -3'
miRNA:   3'- aCCGUGACCCGagGGCCGGU-----UUC-CGc -5'
6682 3' -61.7 NC_001847.1 + 54495 0.71 0.306161
Target:  5'- cGGCGCcGGGuCUCCCGcgagcgccgccgucGCCAucGGCa -3'
miRNA:   3'- aCCGUGaCCC-GAGGGC--------------CGGUuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 103492 0.71 0.322362
Target:  5'- gGGCGCgcGGGCUCCgGGCCcgccgaaacAAAGuGCa -3'
miRNA:   3'- aCCGUGa-CCCGAGGgCCGG---------UUUC-CGc -5'
6682 3' -61.7 NC_001847.1 + 88912 0.71 0.336962
Target:  5'- aGGCACUGGuGCgagauuuccCCgCGGCCGGcccGGCGg -3'
miRNA:   3'- aCCGUGACC-CGa--------GG-GCCGGUUu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 31006 0.71 0.336962
Target:  5'- cGGCGCUgGGGCUCggggagCCGGaCUucgugGAGGGCGa -3'
miRNA:   3'- aCCGUGA-CCCGAG------GGCC-GG-----UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 68086 0.71 0.336221
Target:  5'- cGGCACUGaacccuaGGCUCagCGuGCCAcaAGGGCGg -3'
miRNA:   3'- aCCGUGAC-------CCGAGg-GC-CGGU--UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 37582 0.71 0.308239
Target:  5'- cUGGcCGCUGcGGCUgCggCGGCCGGGGGCc -3'
miRNA:   3'- -ACC-GUGAC-CCGAgG--GCCGGUUUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.