miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 76401 0.66 0.625527
Target:  5'- gGGCGCcGGGggCCgCGGC-GGGGGCa -3'
miRNA:   3'- aCCGUGaCCCgaGG-GCCGgUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 124544 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 71475 0.66 0.585576
Target:  5'- cGGCACc-GGCUgagCCCGGCaacgguGGCGg -3'
miRNA:   3'- aCCGUGacCCGA---GGGCCGguuu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 67549 0.66 0.585576
Target:  5'- aGGCGC-GGGCgguucUCCCagaucggcgcgGGCCAAAgccucGGCGa -3'
miRNA:   3'- aCCGUGaCCCG-----AGGG-----------CCGGUUU-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 16671 0.66 0.585576
Target:  5'- aGGCGCgcccGGGC-CuuGcGCCGcAGGCa -3'
miRNA:   3'- aCCGUGa---CCCGaGggC-CGGUuUCCGc -5'
6682 3' -61.7 NC_001847.1 + 64334 0.66 0.585576
Target:  5'- cGGCGCUcGGCggauccccUCCCGGCCccgccGCGa -3'
miRNA:   3'- aCCGUGAcCCG--------AGGGCCGGuuuc-CGC- -5'
6682 3' -61.7 NC_001847.1 + 34790 0.66 0.625527
Target:  5'- cGGCGC-GcGGCUacgacCCgCGGCCGcuGGCGc -3'
miRNA:   3'- aCCGUGaC-CCGA-----GG-GCCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134894 0.66 0.605514
Target:  5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3'
miRNA:   3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 96460 0.66 0.625527
Target:  5'- aGGCGCUGcggagaccaGGCUUgCGGgCGGcGGGCGu -3'
miRNA:   3'- aCCGUGAC---------CCGAGgGCCgGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 21731 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 15544 0.66 0.615514
Target:  5'- cUGGCGCcGGuGCgcgCgCGGCCGucGGGCc -3'
miRNA:   3'- -ACCGUGaCC-CGa--GgGCCGGUu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 12489 0.66 0.624526
Target:  5'- gUGGCgGCggGGGCggccaagaaCCCgGGCCAgacgacgAAGGCGa -3'
miRNA:   3'- -ACCG-UGa-CCCGa--------GGG-CCGGU-------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 31094 0.66 0.585576
Target:  5'- cGGCGCUGGGg-CCgGGCagcgcGGUGg -3'
miRNA:   3'- aCCGUGACCCgaGGgCCGguuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 74387 0.66 0.585576
Target:  5'- aGGCGCUGGGggaccgCgCGGCCGccGcGCGc -3'
miRNA:   3'- aCCGUGACCCga----GgGCCGGUuuC-CGC- -5'
6682 3' -61.7 NC_001847.1 + 103397 0.66 0.575652
Target:  5'- cGGCGCcGGG-UCCUGGCCcuccGCGg -3'
miRNA:   3'- aCCGUGaCCCgAGGGCCGGuuucCGC- -5'
6682 3' -61.7 NC_001847.1 + 99804 0.66 0.615514
Target:  5'- gUGGUGC-GGGgUCggagCGGCCGGGGGCc -3'
miRNA:   3'- -ACCGUGaCCCgAGg---GCCGGUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 50274 0.66 0.595532
Target:  5'- gGGCGCguacgUGGGCcgccuagCCgGGCUAGuGGGCGc -3'
miRNA:   3'- aCCGUG-----ACCCGa------GGgCCGGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 87685 0.66 0.585576
Target:  5'- gGGCGCUgGGGCUgCUGcggcGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGA-CCCGAgGGC----CGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 57773 0.66 0.585576
Target:  5'- gGGCuGCUGGuGCUCgCCGGgCu--GGUGg -3'
miRNA:   3'- aCCG-UGACC-CGAG-GGCCgGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 50524 0.66 0.615514
Target:  5'- cGGCAU--GGC-CCCGcUCGAAGGCGa -3'
miRNA:   3'- aCCGUGacCCGaGGGCcGGUUUCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.