Results 21 - 40 of 302 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6682 | 3' | -61.7 | NC_001847.1 | + | 76401 | 0.66 | 0.625527 |
Target: 5'- gGGCGCcGGGggCCgCGGC-GGGGGCa -3' miRNA: 3'- aCCGUGaCCCgaGG-GCCGgUUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 124544 | 0.66 | 0.625527 |
Target: 5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3' miRNA: 3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 71475 | 0.66 | 0.585576 |
Target: 5'- cGGCACc-GGCUgagCCCGGCaacgguGGCGg -3' miRNA: 3'- aCCGUGacCCGA---GGGCCGguuu--CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 67549 | 0.66 | 0.585576 |
Target: 5'- aGGCGC-GGGCgguucUCCCagaucggcgcgGGCCAAAgccucGGCGa -3' miRNA: 3'- aCCGUGaCCCG-----AGGG-----------CCGGUUU-----CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 16671 | 0.66 | 0.585576 |
Target: 5'- aGGCGCgcccGGGC-CuuGcGCCGcAGGCa -3' miRNA: 3'- aCCGUGa---CCCGaGggC-CGGUuUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 64334 | 0.66 | 0.585576 |
Target: 5'- cGGCGCUcGGCggauccccUCCCGGCCccgccGCGa -3' miRNA: 3'- aCCGUGAcCCG--------AGGGCCGGuuuc-CGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 34790 | 0.66 | 0.625527 |
Target: 5'- cGGCGC-GcGGCUacgacCCgCGGCCGcuGGCGc -3' miRNA: 3'- aCCGUGaC-CCGA-----GG-GCCGGUuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 134894 | 0.66 | 0.605514 |
Target: 5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3' miRNA: 3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 96460 | 0.66 | 0.625527 |
Target: 5'- aGGCGCUGcggagaccaGGCUUgCGGgCGGcGGGCGu -3' miRNA: 3'- aCCGUGAC---------CCGAGgGCCgGUU-UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 21731 | 0.66 | 0.625527 |
Target: 5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3' miRNA: 3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 15544 | 0.66 | 0.615514 |
Target: 5'- cUGGCGCcGGuGCgcgCgCGGCCGucGGGCc -3' miRNA: 3'- -ACCGUGaCC-CGa--GgGCCGGUu-UCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 12489 | 0.66 | 0.624526 |
Target: 5'- gUGGCgGCggGGGCggccaagaaCCCgGGCCAgacgacgAAGGCGa -3' miRNA: 3'- -ACCG-UGa-CCCGa--------GGG-CCGGU-------UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 31094 | 0.66 | 0.585576 |
Target: 5'- cGGCGCUGGGg-CCgGGCagcgcGGUGg -3' miRNA: 3'- aCCGUGACCCgaGGgCCGguuu-CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 74387 | 0.66 | 0.585576 |
Target: 5'- aGGCGCUGGGggaccgCgCGGCCGccGcGCGc -3' miRNA: 3'- aCCGUGACCCga----GgGCCGGUuuC-CGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 103397 | 0.66 | 0.575652 |
Target: 5'- cGGCGCcGGG-UCCUGGCCcuccGCGg -3' miRNA: 3'- aCCGUGaCCCgAGGGCCGGuuucCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 99804 | 0.66 | 0.615514 |
Target: 5'- gUGGUGC-GGGgUCggagCGGCCGGGGGCc -3' miRNA: 3'- -ACCGUGaCCCgAGg---GCCGGUUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 50274 | 0.66 | 0.595532 |
Target: 5'- gGGCGCguacgUGGGCcgccuagCCgGGCUAGuGGGCGc -3' miRNA: 3'- aCCGUG-----ACCCGa------GGgCCGGUU-UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 87685 | 0.66 | 0.585576 |
Target: 5'- gGGCGCUgGGGCUgCUGcggcGCCGc-GGCGg -3' miRNA: 3'- aCCGUGA-CCCGAgGGC----CGGUuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 57773 | 0.66 | 0.585576 |
Target: 5'- gGGCuGCUGGuGCUCgCCGGgCu--GGUGg -3' miRNA: 3'- aCCG-UGACC-CGAG-GGCCgGuuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 50524 | 0.66 | 0.615514 |
Target: 5'- cGGCAU--GGC-CCCGcUCGAAGGCGa -3' miRNA: 3'- aCCGUGacCCGaGGGCcGGUUUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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