Results 21 - 40 of 302 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 3' | -61.7 | NC_001847.1 | + | 50524 | 0.66 | 0.615514 |
Target: 5'- cGGCAU--GGC-CCCGcUCGAAGGCGa -3' miRNA: 3'- aCCGUGacCCGaGGGCcGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 94146 | 0.66 | 0.575652 |
Target: 5'- aGGUGCUGGGCgacaucUCgCGGCgGcugcuGGGCGc -3' miRNA: 3'- aCCGUGACCCG------AGgGCCGgUu----UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 103699 | 0.66 | 0.595532 |
Target: 5'- cGGCccGCgccgGGGCcgCCgCGGCCGccGGCc -3' miRNA: 3'- aCCG--UGa---CCCGa-GG-GCCGGUuuCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 34790 | 0.66 | 0.625527 |
Target: 5'- cGGCGC-GcGGCUacgacCCgCGGCCGcuGGCGc -3' miRNA: 3'- aCCGUGaC-CCGA-----GG-GCCGGUuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 64334 | 0.66 | 0.585576 |
Target: 5'- cGGCGCUcGGCggauccccUCCCGGCCccgccGCGa -3' miRNA: 3'- aCCGUGAcCCG--------AGGGCCGGuuuc-CGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 16671 | 0.66 | 0.585576 |
Target: 5'- aGGCGCgcccGGGC-CuuGcGCCGcAGGCa -3' miRNA: 3'- aCCGUGa---CCCGaGggC-CGGUuUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 74387 | 0.66 | 0.585576 |
Target: 5'- aGGCGCUGGGggaccgCgCGGCCGccGcGCGc -3' miRNA: 3'- aCCGUGACCCga----GgGCCGGUuuC-CGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 21731 | 0.66 | 0.625527 |
Target: 5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3' miRNA: 3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 93596 | 0.66 | 0.625527 |
Target: 5'- cGGCGCUGGaGaagaUCaaGGCCcgcGGCGg -3' miRNA: 3'- aCCGUGACC-Cg---AGggCCGGuuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 134860 | 0.66 | 0.595532 |
Target: 5'- cGGCGCccgcgcGGGCUCggCGGCCcccGGGCu -3' miRNA: 3'- aCCGUGa-----CCCGAGg-GCCGGuu-UCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 30021 | 0.66 | 0.575652 |
Target: 5'- -aGCGCUGGccGCgucuauggCCgCGGCCGuGGGCGa -3' miRNA: 3'- acCGUGACC--CGa-------GG-GCCGGUuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 76401 | 0.66 | 0.625527 |
Target: 5'- gGGCGCcGGGggCCgCGGC-GGGGGCa -3' miRNA: 3'- aCCGUGaCCCgaGG-GCCGgUUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 31094 | 0.66 | 0.585576 |
Target: 5'- cGGCGCUGGGg-CCgGGCagcgcGGUGg -3' miRNA: 3'- aCCGUGACCCgaGGgCCGguuu-CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 87685 | 0.66 | 0.585576 |
Target: 5'- gGGCGCUgGGGCUgCUGcggcGCCGc-GGCGg -3' miRNA: 3'- aCCGUGA-CCCGAgGGC----CGGUuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 129322 | 0.66 | 0.625527 |
Target: 5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3' miRNA: 3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 48839 | 0.66 | 0.615514 |
Target: 5'- -cGCGCggGGGCgCCuCGGCCGcgcGGCGc -3' miRNA: 3'- acCGUGa-CCCGaGG-GCCGGUuu-CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 103964 | 0.66 | 0.584582 |
Target: 5'- cGGCGC-GcGGCUCCggcagcgCGGCCGcgcagAAGGCc -3' miRNA: 3'- aCCGUGaC-CCGAGG-------GCCGGU-----UUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 67549 | 0.66 | 0.585576 |
Target: 5'- aGGCGC-GGGCgguucUCCCagaucggcgcgGGCCAAAgccucGGCGa -3' miRNA: 3'- aCCGUGaCCCG-----AGGG-----------CCGGUUU-----CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 57773 | 0.66 | 0.585576 |
Target: 5'- gGGCuGCUGGuGCUCgCCGGgCu--GGUGg -3' miRNA: 3'- aCCG-UGACC-CGAG-GGCCgGuuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 130511 | 0.66 | 0.612513 |
Target: 5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3' miRNA: 3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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