miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 102955 0.74 0.207016
Target:  5'- gGGC-CUcGGGC-CCCGGCCGGGGGg- -3'
miRNA:   3'- aCCGuGA-CCCGaGGGCCGGUUUCCgc -5'
6682 3' -61.7 NC_001847.1 + 84716 0.74 0.212078
Target:  5'- -aGCGC-GGGUUCCCGGCagcguaGGGGGCGg -3'
miRNA:   3'- acCGUGaCCCGAGGGCCGg-----UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 115293 0.74 0.212078
Target:  5'- cGGCGCccccGGGCg-CgGGCCAAGGGCGc -3'
miRNA:   3'- aCCGUGa---CCCGagGgCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 86934 0.74 0.217246
Target:  5'- cGGCGCUGcGCUCCuCGGCCcu-GGCc -3'
miRNA:   3'- aCCGUGACcCGAGG-GCCGGuuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 14206 0.74 0.217246
Target:  5'- cGGgGCUGGcGgUCaggCCGGCCGGGGGCGu -3'
miRNA:   3'- aCCgUGACC-CgAG---GGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 116407 0.74 0.220927
Target:  5'- cGGCGCucUGGGC-CCCGGgCCGcgcgcuugggcucgAGGGCGg -3'
miRNA:   3'- aCCGUG--ACCCGaGGGCC-GGU--------------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 46921 0.74 0.22252
Target:  5'- gGGCGCgucgggcccGGGCUCCgGGCCGcgugcGGCGa -3'
miRNA:   3'- aCCGUGa--------CCCGAGGgCCGGUuu---CCGC- -5'
6682 3' -61.7 NC_001847.1 + 85152 0.74 0.227904
Target:  5'- gGGCGCgcGGGCUCCUcucGCgGAGGGCGu -3'
miRNA:   3'- aCCGUGa-CCCGAGGGc--CGgUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 69471 0.73 0.233397
Target:  5'- cGGCgGCgGGGCUCCUgcuGGCCGGgcuGGCGg -3'
miRNA:   3'- aCCG-UGaCCCGAGGG---CCGGUUu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 37033 0.73 0.244718
Target:  5'- gGGCGCcGGGCUCgCacucuagccugGGCUggGGGCGg -3'
miRNA:   3'- aCCGUGaCCCGAGgG-----------CCGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 14132 0.73 0.244718
Target:  5'- gGGCGaUGGGCggggCCCGcGCCu-GGGCGg -3'
miRNA:   3'- aCCGUgACCCGa---GGGC-CGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 74047 0.73 0.244718
Target:  5'- gUGGCGCUGGcCUCCuucuCGGUCAAcGGCGu -3'
miRNA:   3'- -ACCGUGACCcGAGG----GCCGGUUuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 12937 0.73 0.256491
Target:  5'- gGGCACccGGC-CCCGGCUAGuguGGCGg -3'
miRNA:   3'- aCCGUGacCCGaGGGCCGGUUu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 102033 0.73 0.256491
Target:  5'- aGGUACgGGGCcCCCGGCCcaugcuccGGCGu -3'
miRNA:   3'- aCCGUGaCCCGaGGGCCGGuuu-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 43523 0.73 0.262549
Target:  5'- cGGCGCgcgcGGGCUUCCucgcGGCCAAcacGGCGc -3'
miRNA:   3'- aCCGUGa---CCCGAGGG----CCGGUUu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 29490 0.73 0.262549
Target:  5'- cGGCAC---GCUCuCCGGCCGcGGGCGg -3'
miRNA:   3'- aCCGUGaccCGAG-GGCCGGUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 29197 0.72 0.268723
Target:  5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 132010 0.72 0.268723
Target:  5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 120320 0.72 0.27438
Target:  5'- cGGCugauuuucCUGGaacaccaGCUCCCGGCCGGGcGGCGc -3'
miRNA:   3'- aCCGu-------GACC-------CGAGGGCCGGUUU-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 134924 0.72 0.275014
Target:  5'- aGGCccggGCUcGGGCcCCCGggcGCCGGGGGCGg -3'
miRNA:   3'- aCCG----UGA-CCCGaGGGC---CGGUUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.