miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 34548 0.66 0.615514
Target:  5'- cUGGC-C-GGGCUgCUCGGCCGcugcagcGGCGg -3'
miRNA:   3'- -ACCGuGaCCCGA-GGGCCGGUuu-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 74354 0.66 0.615514
Target:  5'- gGGCGCcaccaaggUGGGCUgCUGcGCCucguGGCGc -3'
miRNA:   3'- aCCGUG--------ACCCGAgGGC-CGGuuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 103011 0.66 0.615514
Target:  5'- gGGCGCgGcGGCgCCCaGcGCCGgcGGCGg -3'
miRNA:   3'- aCCGUGaC-CCGaGGG-C-CGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 100598 0.66 0.615514
Target:  5'- cGGC-CUGuGGCcccaagcgCCCGGCgGgcGGCGc -3'
miRNA:   3'- aCCGuGAC-CCGa-------GGGCCGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 90745 0.66 0.615514
Target:  5'- cGGCGCguggccGGGC-CCCGGgagcgggagcgcCCuuGAGGCGc -3'
miRNA:   3'- aCCGUGa-----CCCGaGGGCC------------GGu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 75849 0.66 0.615514
Target:  5'- cUGGCACccUGGGUacgguuUCCCGccGCC-GGGGCu -3'
miRNA:   3'- -ACCGUG--ACCCG------AGGGC--CGGuUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 130511 0.66 0.612513
Target:  5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3'
miRNA:   3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 27698 0.66 0.612513
Target:  5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3'
miRNA:   3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 3940 0.66 0.605514
Target:  5'- cUGGCGCcgcggcgggggGGGCgccgUCuCCGGCggCGAGGGCGc -3'
miRNA:   3'- -ACCGUGa----------CCCG----AG-GGCCG--GUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 116568 0.66 0.605514
Target:  5'- aUGGCGCacgUGGGCaUCUGcGCUcuGGGCGc -3'
miRNA:   3'- -ACCGUG---ACCCGaGGGC-CGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 14446 0.66 0.605514
Target:  5'- cGGCGCcgGGGUgcgcggCCgCGGCCucuGGGUc -3'
miRNA:   3'- aCCGUGa-CCCGa-----GG-GCCGGuu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 32081 0.66 0.605514
Target:  5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3'
miRNA:   3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134894 0.66 0.605514
Target:  5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3'
miRNA:   3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 90310 0.66 0.605514
Target:  5'- aGcGCGCguucggugGGGCcgCCgGgGCCGGGGGCGc -3'
miRNA:   3'- aC-CGUGa-------CCCGa-GGgC-CGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 25416 0.66 0.603516
Target:  5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3'
miRNA:   3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 128229 0.66 0.603516
Target:  5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3'
miRNA:   3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134860 0.66 0.595532
Target:  5'- cGGCGCccgcgcGGGCUCggCGGCCcccGGGCu -3'
miRNA:   3'- aCCGUGa-----CCCGAGg-GCCGGuu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 50274 0.66 0.595532
Target:  5'- gGGCGCguacgUGGGCcgccuagCCgGGCUAGuGGGCGc -3'
miRNA:   3'- aCCGUG-----ACCCGa------GGgCCGGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 103699 0.66 0.595532
Target:  5'- cGGCccGCgccgGGGCcgCCgCGGCCGccGGCc -3'
miRNA:   3'- aCCG--UGa---CCCGa-GG-GCCGGUuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 67838 0.66 0.595532
Target:  5'- cGGCg--GGGCUgCCGGCgCu--GGCGc -3'
miRNA:   3'- aCCGugaCCCGAgGGCCG-GuuuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.