miRNA display CGI


Results 41 - 60 of 302 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 88253 0.66 0.595532
Target:  5'- cGGCGCgGGGCgCCgGGCgGGgacGGGgGg -3'
miRNA:   3'- aCCGUGaCCCGaGGgCCGgUU---UCCgC- -5'
6682 3' -61.7 NC_001847.1 + 886 0.66 0.595532
Target:  5'- cGGCccGCgccgGGGCcgCCgCGGCCGccGGCc -3'
miRNA:   3'- aCCG--UGa---CCCGa-GG-GCCGGUuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 56636 0.66 0.595532
Target:  5'- -cGCGCga-GCagCCGGCCGAGGGUGg -3'
miRNA:   3'- acCGUGaccCGagGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134860 0.66 0.595532
Target:  5'- cGGCGCccgcgcGGGCUCggCGGCCcccGGGCu -3'
miRNA:   3'- aCCGUGa-----CCCGAGg-GCCGGuu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 103699 0.66 0.595532
Target:  5'- cGGCccGCgccgGGGCcgCCgCGGCCGccGGCc -3'
miRNA:   3'- aCCG--UGa---CCCGa-GG-GCCGGUuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 50274 0.66 0.595532
Target:  5'- gGGCGCguacgUGGGCcgccuagCCgGGCUAGuGGGCGc -3'
miRNA:   3'- aCCGUG-----ACCCGa------GGgCCGGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 67549 0.66 0.585576
Target:  5'- aGGCGC-GGGCgguucUCCCagaucggcgcgGGCCAAAgccucGGCGa -3'
miRNA:   3'- aCCGUGaCCCG-----AGGG-----------CCGGUUU-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 71475 0.66 0.585576
Target:  5'- cGGCACc-GGCUgagCCCGGCaacgguGGCGg -3'
miRNA:   3'- aCCGUGacCCGA---GGGCCGguuu--CCGC- -5'
6682 3' -61.7 NC_001847.1 + 89042 0.66 0.585576
Target:  5'- gUGcGCGCUGGGCga-CGGCau--GGCGc -3'
miRNA:   3'- -AC-CGUGACCCGaggGCCGguuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 16671 0.66 0.585576
Target:  5'- aGGCGCgcccGGGC-CuuGcGCCGcAGGCa -3'
miRNA:   3'- aCCGUGa---CCCGaGggC-CGGUuUCCGc -5'
6682 3' -61.7 NC_001847.1 + 31094 0.66 0.585576
Target:  5'- cGGCGCUGGGg-CCgGGCagcgcGGUGg -3'
miRNA:   3'- aCCGUGACCCgaGGgCCGguuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 64334 0.66 0.585576
Target:  5'- cGGCGCUcGGCggauccccUCCCGGCCccgccGCGa -3'
miRNA:   3'- aCCGUGAcCCG--------AGGGCCGGuuuc-CGC- -5'
6682 3' -61.7 NC_001847.1 + 42722 0.66 0.585576
Target:  5'- uUGGCGCggcGGGCggCCGcGCgGgcGGCGg -3'
miRNA:   3'- -ACCGUGa--CCCGagGGC-CGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 87685 0.66 0.585576
Target:  5'- gGGCGCUgGGGCUgCUGcggcGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGA-CCCGAgGGC----CGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 74387 0.66 0.585576
Target:  5'- aGGCGCUGGGggaccgCgCGGCCGccGcGCGc -3'
miRNA:   3'- aCCGUGACCCga----GgGCCGGUuuC-CGC- -5'
6682 3' -61.7 NC_001847.1 + 57773 0.66 0.585576
Target:  5'- gGGCuGCUGGuGCUCgCCGGgCu--GGUGg -3'
miRNA:   3'- aCCG-UGACC-CGAG-GGCCgGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 1151 0.66 0.584582
Target:  5'- cGGCGC-GcGGCUCCggcagcgCGGCCGcgcagAAGGCc -3'
miRNA:   3'- aCCGUGaC-CCGAGG-------GCCGGU-----UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 103964 0.66 0.584582
Target:  5'- cGGCGC-GcGGCUCCggcagcgCGGCCGcgcagAAGGCc -3'
miRNA:   3'- aCCGUGaC-CCGAGG-------GCCGGU-----UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 103397 0.66 0.575652
Target:  5'- cGGCGCcGGG-UCCUGGCCcuccGCGg -3'
miRNA:   3'- aCCGUGaCCCgAGGGCCGGuuucCGC- -5'
6682 3' -61.7 NC_001847.1 + 30021 0.66 0.575652
Target:  5'- -aGCGCUGGccGCgucuauggCCgCGGCCGuGGGCGa -3'
miRNA:   3'- acCGUGACC--CGa-------GG-GCCGGUuUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.