miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 135039 0.75 0.174442
Target:  5'- gGGCGCgGGGCg-CCGGacCCAGGGGCGg -3'
miRNA:   3'- aCCGUGaCCCGagGGCC--GGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134924 0.72 0.275014
Target:  5'- aGGCccggGCUcGGGCcCCCGggcGCCGGGGGCGg -3'
miRNA:   3'- aCCG----UGA-CCCGaGGGC---CGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134894 0.66 0.605514
Target:  5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3'
miRNA:   3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134860 0.66 0.595532
Target:  5'- cGGCGCccgcgcGGGCUCggCGGCCcccGGGCu -3'
miRNA:   3'- aCCGUGa-----CCCGAGg-GCCGGuu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 134213 0.72 0.281422
Target:  5'- gGGCGCgggcucGGGCuUCCCGGCgCcggcGGGCGg -3'
miRNA:   3'- aCCGUGa-----CCCG-AGGGCCG-Guu--UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 134192 0.69 0.434331
Target:  5'- cGGCGCagcgUGGaGCggcgcgCgCgGGCCGAGGGCGg -3'
miRNA:   3'- aCCGUG----ACC-CGa-----G-GgCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 133819 0.71 0.336962
Target:  5'- cGGCGCUgGGGCUCggggagCCGGaCUucgugGAGGGCGa -3'
miRNA:   3'- aCCGUGA-CCCGAG------GGCC-GG-----UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 133262 0.71 0.329602
Target:  5'- cGGCGCUGGGCaaCCGGCUGcugcuGAGcGCc -3'
miRNA:   3'- aCCGUGACCCGagGGCCGGU-----UUC-CGc -5'
6682 3' -61.7 NC_001847.1 + 133178 0.7 0.375537
Target:  5'- aGGCGCUGgcGGCgccgCCCGGCgAGGacgagcgccGGCGg -3'
miRNA:   3'- aCCGUGAC--CCGa---GGGCCGgUUU---------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 132545 0.71 0.344442
Target:  5'- cGGCGCggcGGGCUCgcgugCGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa--CCCGAGg----GCCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 132456 0.67 0.526726
Target:  5'- gGGCGCcgcGGGCggaCCCGGaggaCGgguccGAGGCGg -3'
miRNA:   3'- aCCGUGa--CCCGa--GGGCCg---GU-----UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 132391 0.69 0.434331
Target:  5'- cGGCGCcGGcGCcgccgcgCCgGGCCGGGGGCc -3'
miRNA:   3'- aCCGUGaCC-CGa------GGgCCGGUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 132339 0.67 0.554944
Target:  5'- cGGCgcgGCUGGcggccgcGCUCgCGGCCcuGGAGGCc -3'
miRNA:   3'- aCCG---UGACC-------CGAGgGCCGG--UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 132183 0.68 0.488739
Target:  5'- cGGCGCUGcgcgccgaggcGGC-CgCCGcGCUGGAGGCGg -3'
miRNA:   3'- aCCGUGAC-----------CCGaG-GGC-CGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 132010 0.72 0.268723
Target:  5'- cGGCGCcgccGGGCUCCCggugcucucGGCCGc-GGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGG---------CCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 131889 0.68 0.479441
Target:  5'- cGGCGCcGGcGC-CCCuGCCGccGGCGa -3'
miRNA:   3'- aCCGUGaCC-CGaGGGcCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 130768 0.67 0.565766
Target:  5'- cGGCGCgcgcGCUCgCGGUCGcggugGAGGCGg -3'
miRNA:   3'- aCCGUGacc-CGAGgGCCGGU-----UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 130511 0.66 0.612513
Target:  5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3'
miRNA:   3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 129460 0.79 0.106323
Target:  5'- cGGguCUGGGCggcCCCGGCCGGcccaccuucgcgccuGGGCGg -3'
miRNA:   3'- aCCguGACCCGa--GGGCCGGUU---------------UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 129322 0.66 0.625527
Target:  5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3'
miRNA:   3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.