miRNA display CGI


Results 41 - 60 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 102078 0.66 0.432981
Target:  5'- gGCaGGCGCGGGCcgcgcgcgaCCCGGUCaauaaacuccuGCGCCGc -3'
miRNA:   3'- gCGgUCGCGCCUG---------GGGCCGG-----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27184 0.66 0.40009
Target:  5'- uGUCGGCGgGGugCUucagcguuaggaCGGgCGCGCCGg -3'
miRNA:   3'- gCGGUCGCgCCugGG------------GCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 15023 0.66 0.416337
Target:  5'- gGCC-GCGCGaGCCgCGGCCGC-CgGg -3'
miRNA:   3'- gCGGuCGCGCcUGGgGCCGGCGuGgU- -5'
6683 3' -66.4 NC_001847.1 + 86585 0.66 0.416337
Target:  5'- aCGgCGGCGCuucguucuuuacGcGGCUCCGGgCGCGCCu -3'
miRNA:   3'- -GCgGUCGCG------------C-CUGGGGCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 38833 0.66 0.40009
Target:  5'- uGCCGcCGCcGGCCCCGccauuGCCGcCGCCGg -3'
miRNA:   3'- gCGGUcGCGcCUGGGGC-----CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 82659 0.66 0.441447
Target:  5'- cCGCgAGCGCGGcGCgCCGcGCuCGUGCUg -3'
miRNA:   3'- -GCGgUCGCGCC-UGgGGC-CG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 81311 0.66 0.408163
Target:  5'- gCGCCGGCucuucaGCGcccccGCUCCGGC-GCGCCAg -3'
miRNA:   3'- -GCGGUCG------CGCc----UGGGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102881 0.66 0.432981
Target:  5'- -uUCGGCGCGGcggGCCCgGGCC-CGCUc -3'
miRNA:   3'- gcGGUCGCGCC---UGGGgCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 1411 0.66 0.441447
Target:  5'- aGgCAGgcaCGCGG-CCCCGcGCCcCGCCAg -3'
miRNA:   3'- gCgGUC---GCGCCuGGGGC-CGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40960 0.66 0.41716
Target:  5'- gGCCAGCGacgugccgacgagcaGGuuGCgCCgGGCCGCGCUc -3'
miRNA:   3'- gCGGUCGCg--------------CC--UG-GGgCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 15619 0.66 0.416337
Target:  5'- aGCCuGC-CGG-CCgCGGCCGcCGCCc -3'
miRNA:   3'- gCGGuCGcGCCuGGgGCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 93806 0.66 0.40009
Target:  5'- gGCC-GCGCGGccgaguCCCCGcuggacuuugcGCCGCGCgAg -3'
miRNA:   3'- gCGGuCGCGCCu-----GGGGC-----------CGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 104035 0.66 0.423778
Target:  5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3'
miRNA:   3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 7445 0.66 0.421289
Target:  5'- uCGCUAGCGCGGACCUacuacaucugccagCGgaacaucgaguGCCucucaaaGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGG--------------GC-----------CGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 96557 0.66 0.40009
Target:  5'- aGCCGcgcGCGCGGuCUgCUGGCCGUguGCCu -3'
miRNA:   3'- gCGGU---CGCGCCuGG-GGCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 95827 0.66 0.416337
Target:  5'- gCGaCCAGCGCGgcuucGugUCCGuGCUGCACaCGa -3'
miRNA:   3'- -GC-GGUCGCGC-----CugGGGC-CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 79757 0.66 0.40009
Target:  5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3'
miRNA:   3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 104972 0.66 0.416337
Target:  5'- gCGCCAGgGCucggGGAagagcgggugguCCgCGaGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCgCG----CCU------------GGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 49032 0.66 0.432981
Target:  5'- uGCCAGCgGCGaGCCgUGGUgGCGCgCAg -3'
miRNA:   3'- gCGGUCG-CGCcUGGgGCCGgCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 104376 0.66 0.40009
Target:  5'- gCGCC-GCGa-GGCCagcaCGGCgCGCGCCAg -3'
miRNA:   3'- -GCGGuCGCgcCUGGg---GCCG-GCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.