miRNA display CGI


Results 21 - 40 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 81311 0.66 0.408163
Target:  5'- gCGCCGGCucuucaGCGcccccGCUCCGGC-GCGCCAg -3'
miRNA:   3'- -GCGGUCG------CGCc----UGGGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 103579 0.66 0.408163
Target:  5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 30597 0.66 0.408163
Target:  5'- cCGCCGcGUaGCGG-CCCCGgggccGCCGCGCa- -3'
miRNA:   3'- -GCGGU-CG-CGCCuGGGGC-----CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 43393 0.66 0.408163
Target:  5'- gCGCCcgcggaccgaugGGCguacGCGGACCUCGcGCUGCugCu -3'
miRNA:   3'- -GCGG------------UCG----CGCCUGGGGC-CGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 69396 0.66 0.399289
Target:  5'- uGCCGGCggccuuuGCGGGCCCgGcGCUGUuCCu -3'
miRNA:   3'- gCGGUCG-------CGCCUGGGgC-CGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 104376 0.66 0.40009
Target:  5'- gCGCC-GCGa-GGCCagcaCGGCgCGCGCCAg -3'
miRNA:   3'- -GCGGuCGCgcCUGGg---GCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 80691 0.66 0.416337
Target:  5'- gCGCCGGCgGCGG-CUgCGGCUGgaagaagcaCACCGg -3'
miRNA:   3'- -GCGGUCG-CGCCuGGgGCCGGC---------GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 7445 0.66 0.421289
Target:  5'- uCGCUAGCGCGGACCUacuacaucugccagCGgaacaucgaguGCCucucaaaGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGG--------------GC-----------CGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121204 0.66 0.42461
Target:  5'- uGCgCGGgGCGGcCCCCcuGCCGCGgCGc -3'
miRNA:   3'- gCG-GUCgCGCCuGGGGc-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 93806 0.66 0.40009
Target:  5'- gGCC-GCGCGGccgaguCCCCGcuggacuuugcGCCGCGCgAg -3'
miRNA:   3'- gCGGuCGCGCCu-----GGGGC-----------CGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 96557 0.66 0.40009
Target:  5'- aGCCGcgcGCGCGGuCUgCUGGCCGUguGCCu -3'
miRNA:   3'- gCGGU---CGCGCCuGG-GGCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 114434 0.66 0.40009
Target:  5'- cCGCCAGCG-GGGCCUCGuCCucguaGCACUc -3'
miRNA:   3'- -GCGGUCGCgCCUGGGGCcGG-----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 86585 0.66 0.416337
Target:  5'- aCGgCGGCGCuucguucuuuacGcGGCUCCGGgCGCGCCu -3'
miRNA:   3'- -GCgGUCGCG------------C-CUGGGGCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 104035 0.66 0.423778
Target:  5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3'
miRNA:   3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 124934 0.66 0.408163
Target:  5'- aGCgGGCGCGcccuGGgCCCGGCgGCGgCGg -3'
miRNA:   3'- gCGgUCGCGC----CUgGGGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 99695 0.66 0.40009
Target:  5'- gCGCgCGGCGCGGGCCgCCGuaaaGUCaGCGCg- -3'
miRNA:   3'- -GCG-GUCGCGCCUGG-GGC----CGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 105043 0.66 0.408163
Target:  5'- gCGCCgcggcgcugGGCGCGGGcgugugguaguCCCCgGGCgGCACgCGg -3'
miRNA:   3'- -GCGG---------UCGCGCCU-----------GGGG-CCGgCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 113355 0.66 0.40009
Target:  5'- gGCC--CGgGGACccgcgCCCGGCCgGCGCCGg -3'
miRNA:   3'- gCGGucGCgCCUG-----GGGCCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 104972 0.66 0.416337
Target:  5'- gCGCCAGgGCucggGGAagagcgggugguCCgCGaGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCgCG----CCU------------GGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 79757 0.66 0.40009
Target:  5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3'
miRNA:   3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.