miRNA display CGI


Results 21 - 40 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 129492 0.66 0.40573
Target:  5'- gCGCCuGgGCGGGCCUUcaaagggucuauaaGGCgaGCACCGu -3'
miRNA:   3'- -GCGGuCgCGCCUGGGG--------------CCGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 16896 0.66 0.407351
Target:  5'- aCGCC-GCGCaGGuuuaccaGCCCgGGCCGCucggcgcagacGCCGg -3'
miRNA:   3'- -GCGGuCGCG-CC-------UGGGgCCGGCG-----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 15619 0.66 0.416337
Target:  5'- aGCCuGC-CGG-CCgCGGCCGcCGCCc -3'
miRNA:   3'- gCGGuCGcGCCuGGgGCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 113438 0.66 0.42461
Target:  5'- uGCUGGCGCuGGuCCuCCGGCUccuCGCCGg -3'
miRNA:   3'- gCGGUCGCG-CCuGG-GGCCGGc--GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 32281 0.66 0.408163
Target:  5'- gCGCCguccgcguGGCGCGG-CCCCGcgacGCCGcCGCgGa -3'
miRNA:   3'- -GCGG--------UCGCGCCuGGGGC----CGGC-GUGgU- -5'
6683 3' -66.4 NC_001847.1 + 93806 0.66 0.40009
Target:  5'- gGCC-GCGCGGccgaguCCCCGcuggacuuugcGCCGCGCgAg -3'
miRNA:   3'- gCGGuCGCGCCu-----GGGGC-----------CGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 15023 0.66 0.416337
Target:  5'- gGCC-GCGCGaGCCgCGGCCGC-CgGg -3'
miRNA:   3'- gCGGuCGCGCcUGGgGCCGGCGuGgU- -5'
6683 3' -66.4 NC_001847.1 + 43393 0.66 0.408163
Target:  5'- gCGCCcgcggaccgaugGGCguacGCGGACCUCGcGCUGCugCu -3'
miRNA:   3'- -GCGG------------UCG----CGCCUGGGGC-CGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 29392 0.66 0.416337
Target:  5'- uGCCGcGCGCGaGGCCCUccuaaccuGGUuugaccugCGCGCCAg -3'
miRNA:   3'- gCGGU-CGCGC-CUGGGG--------CCG--------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 114434 0.66 0.40009
Target:  5'- cCGCCAGCG-GGGCCUCGuCCucguaGCACUc -3'
miRNA:   3'- -GCGGUCGCgCCUGGGGCcGG-----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 31633 0.66 0.407351
Target:  5'- gCGCUAGUgcacuuuguuucgGCGGGCCCgGaGCCcgcGCGCCc -3'
miRNA:   3'- -GCGGUCG-------------CGCCUGGGgC-CGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 113232 0.66 0.408163
Target:  5'- cCGCCucgccCGCGG-CCUCGGCCGUcuCCu -3'
miRNA:   3'- -GCGGuc---GCGCCuGGGGCCGGCGu-GGu -5'
6683 3' -66.4 NC_001847.1 + 121204 0.66 0.42461
Target:  5'- uGCgCGGgGCGGcCCCCcuGCCGCGgCGc -3'
miRNA:   3'- gCG-GUCgCGCCuGGGGc-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 30597 0.66 0.408163
Target:  5'- cCGCCGcGUaGCGG-CCCCGgggccGCCGCGCa- -3'
miRNA:   3'- -GCGGU-CG-CGCCuGGGGC-----CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 45629 0.66 0.408163
Target:  5'- aCGUUGGgGCGGGCCUCG-CUGCGCa- -3'
miRNA:   3'- -GCGGUCgCGCCUGGGGCcGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 53780 0.66 0.40009
Target:  5'- aGCuaugCAGCGUGGGCCaguaCCuGCCGCACg- -3'
miRNA:   3'- gCG----GUCGCGCCUGG----GGcCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 81311 0.66 0.408163
Target:  5'- gCGCCGGCucuucaGCGcccccGCUCCGGC-GCGCCAg -3'
miRNA:   3'- -GCGGUCG------CGCc----UGGGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 43291 0.66 0.416337
Target:  5'- gCGCguGCGCGGGCUgCGGaguacgaagcgCGCGCUg -3'
miRNA:   3'- -GCGguCGCGCCUGGgGCCg----------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 7445 0.66 0.421289
Target:  5'- uCGCUAGCGCGGACCUacuacaucugccagCGgaacaucgaguGCCucucaaaGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGG--------------GC-----------CGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 86585 0.66 0.416337
Target:  5'- aCGgCGGCGCuucguucuuuacGcGGCUCCGGgCGCGCCu -3'
miRNA:   3'- -GCgGUCGCG------------C-CUGGGGCCgGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.