miRNA display CGI


Results 21 - 40 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 2101 0.71 0.207888
Target:  5'- cCGCgCGGCgGCGGGCCgcgaucUCGGCCaGCGCCu -3'
miRNA:   3'- -GCG-GUCG-CGCCUGG------GGCCGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 2159 0.66 0.416337
Target:  5'- gCGCCAGgGCucggGGAagagcgggugguCCgCGaGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCgCG----CCU------------GGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 2230 0.66 0.408163
Target:  5'- gCGCCgcggcgcugGGCGCGGGcgugugguaguCCCCgGGCgGCACgCGg -3'
miRNA:   3'- -GCGG---------UCGCGCCU-----------GGGG-CCGgCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 2326 0.68 0.304189
Target:  5'- aCGCCcgcuGCGCGGAaCCCgccguuuugcacgGGCCGCAUgAg -3'
miRNA:   3'- -GCGGu---CGCGCCUgGGG-------------CCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 2333 0.71 0.212767
Target:  5'- gGCgGGCaGCGGcgGCUCCcGCCGCGCCGg -3'
miRNA:   3'- gCGgUCG-CGCC--UGGGGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 2580 0.79 0.051088
Target:  5'- gCGCCuGCGCGGccGCCgCGGCCGCACgCGa -3'
miRNA:   3'- -GCGGuCGCGCC--UGGgGCCGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 2766 0.7 0.238659
Target:  5'- gCGCCGGCGcCGGcGCCCCcGCCgGCgGCCu -3'
miRNA:   3'- -GCGGUCGC-GCC-UGGGGcCGG-CG-UGGu -5'
6683 3' -66.4 NC_001847.1 + 2803 0.78 0.065856
Target:  5'- cCGCgAGCGCGG-CCgCCaGCCGCGCCGg -3'
miRNA:   3'- -GCGgUCGCGCCuGG-GGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 2873 0.78 0.067541
Target:  5'- gGCCGacGCGCGGGCCgCCGcGCCGCGCg- -3'
miRNA:   3'- gCGGU--CGCGCCUGG-GGC-CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 2935 0.74 0.122823
Target:  5'- cCGCCAGCGCGGccGCCUccagcgcggCGGCCGCcUCGg -3'
miRNA:   3'- -GCGGUCGCGCC--UGGG---------GCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 2990 0.71 0.193826
Target:  5'- gGCCGGCGCuGGagccgcgcgcGCUCCaccgcgucgcgGGCCGCGCCGa -3'
miRNA:   3'- gCGGUCGCG-CC----------UGGGG-----------CCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3075 0.72 0.172239
Target:  5'- cCGCCAGCGCGuccggcgcgcaGGCCgCGGCCgGCagGCCGc -3'
miRNA:   3'- -GCGGUCGCGC-----------CUGGgGCCGG-CG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 3120 0.68 0.332191
Target:  5'- cCGCC-GCgGCcgagagcaccgGGAgCCCGGCgGCGCCGg -3'
miRNA:   3'- -GCGGuCG-CG-----------CCUgGGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3212 0.67 0.361292
Target:  5'- uCGCCGGCGCacGugCCU--CCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCGc-CugGGGccGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3252 0.68 0.3183
Target:  5'- uCGCCGGCGgcagGGGCgCCGGCgcCGCGCg- -3'
miRNA:   3'- -GCGGUCGCg---CCUGgGGCCG--GCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 3311 0.72 0.164222
Target:  5'- aGCgCGGCGCGGGCgCCGcugccGCCgGCGCCGg -3'
miRNA:   3'- gCG-GUCGCGCCUGgGGC-----CGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3698 0.69 0.260641
Target:  5'- aCGaacaCGGcCGCGGGCCCCgcGGCCGCcgcguagcgcgcgGCCGc -3'
miRNA:   3'- -GCg---GUC-GCGCCUGGGG--CCGGCG-------------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 3809 0.66 0.441447
Target:  5'- uGCCGGCaCgGGGCgUCGGCCGCGa-- -3'
miRNA:   3'- gCGGUCGcG-CCUGgGGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 3855 0.71 0.198418
Target:  5'- gCGUCAGCaGCGGGCCCuccagcggcggCGGCCcgucgcgcgGCGCCGc -3'
miRNA:   3'- -GCGGUCG-CGCCUGGG-----------GCCGG---------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3909 0.83 0.026892
Target:  5'- aGCCAGCGCGGGCgCCGGuuGCGCg- -3'
miRNA:   3'- gCGGUCGCGCCUGgGGCCggCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.