Results 1 - 20 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 12 | 0.68 | 0.325191 |
Target: 5'- gCGCC-GCGCGGGCCCC--CUGCgACCc -3' miRNA: 3'- -GCGGuCGCGCCUGGGGccGGCG-UGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 68 | 0.66 | 0.432981 |
Target: 5'- -uUCGGCGCGGcggGCCCgGGCC-CGCUc -3' miRNA: 3'- gcGGUCGCGCC---UGGGgCCGGcGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 138 | 0.74 | 0.119849 |
Target: 5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3' miRNA: 3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 291 | 0.73 | 0.14563 |
Target: 5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3' miRNA: 3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 566 | 0.68 | 0.335023 |
Target: 5'- aCGCCAGCGCcgcgucuccggcgccGGGuccuggcccuCCgCGGCCGCuCCGc -3' miRNA: 3'- -GCGGUCGCG---------------CCU----------GGgGCCGGCGuGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 766 | 0.66 | 0.408163 |
Target: 5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3' miRNA: 3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 887 | 0.68 | 0.30485 |
Target: 5'- gGCCcGCGcCGGggccGCCgCGGCCGCcgGCCGc -3' miRNA: 3'- gCGGuCGC-GCC----UGGgGCCGGCG--UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 924 | 0.73 | 0.149188 |
Target: 5'- cCGCCGGCGcCGGGaagCCCGaGcCCGCGCCc -3' miRNA: 3'- -GCGGUCGC-GCCUg--GGGC-C-GGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 979 | 0.68 | 0.3183 |
Target: 5'- gGCCGGCGgGGcuuccGCCgCGGCgGCGgCAc -3' miRNA: 3'- gCGGUCGCgCC-----UGGgGCCGgCGUgGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1055 | 0.71 | 0.198418 |
Target: 5'- gCGUCuccCGCGGGCCCUGGuCCGCGucCCAg -3' miRNA: 3'- -GCGGuc-GCGCCUGGGGCC-GGCGU--GGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1090 | 0.69 | 0.2855 |
Target: 5'- aCGCCgGGCGcCGcGGCCgCgGGCgGCGCCGc -3' miRNA: 3'- -GCGG-UCGC-GC-CUGG-GgCCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1145 | 0.72 | 0.168188 |
Target: 5'- gCGCCucGGCGCGcGGCUCCGGCaGCGCg- -3' miRNA: 3'- -GCGG--UCGCGC-CUGGGGCCGgCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1222 | 0.66 | 0.423778 |
Target: 5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3' miRNA: 3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1411 | 0.66 | 0.441447 |
Target: 5'- aGgCAGgcaCGCGG-CCCCGcGCCcCGCCAg -3' miRNA: 3'- gCgGUC---GCGCCuGGGGC-CGGcGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1427 | 0.69 | 0.29184 |
Target: 5'- cCGCgGuGCGCGGGCCCaGGCgCGUGgCCAc -3' miRNA: 3'- -GCGgU-CGCGCCUGGGgCCG-GCGU-GGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1513 | 0.68 | 0.29829 |
Target: 5'- aGCC-GCGCGuaggcGGCCUCGGCgCGCGCgAa -3' miRNA: 3'- gCGGuCGCGC-----CUGGGGCCG-GCGUGgU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1563 | 0.66 | 0.40009 |
Target: 5'- gCGCC-GCGa-GGCCagcaCGGCgCGCGCCAg -3' miRNA: 3'- -GCGGuCGCgcCUGGg---GCCG-GCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1604 | 0.71 | 0.193826 |
Target: 5'- gGCCAGCGCGcGgcgcacugcGCCgCGGCaGCACCGc -3' miRNA: 3'- gCGGUCGCGC-C---------UGGgGCCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1924 | 0.68 | 0.309507 |
Target: 5'- cCGCCgcGGCGCGGcggccACUCgGGCCGCcggcgcucguccucGCCGg -3' miRNA: 3'- -GCGG--UCGCGCC-----UGGGgCCGGCG--------------UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 1979 | 0.75 | 0.10235 |
Target: 5'- cCGCCAGCGCcu-CCCCGGCagcgggucguagaGCACCAc -3' miRNA: 3'- -GCGGUCGCGccuGGGGCCGg------------CGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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