miRNA display CGI


Results 1 - 20 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 12 0.68 0.325191
Target:  5'- gCGCC-GCGCGGGCCCC--CUGCgACCc -3'
miRNA:   3'- -GCGGuCGCGCCUGGGGccGGCG-UGGu -5'
6683 3' -66.4 NC_001847.1 + 68 0.66 0.432981
Target:  5'- -uUCGGCGCGGcggGCCCgGGCC-CGCUc -3'
miRNA:   3'- gcGGUCGCGCC---UGGGgCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 138 0.74 0.119849
Target:  5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3'
miRNA:   3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5'
6683 3' -66.4 NC_001847.1 + 291 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 566 0.68 0.335023
Target:  5'- aCGCCAGCGCcgcgucuccggcgccGGGuccuggcccuCCgCGGCCGCuCCGc -3'
miRNA:   3'- -GCGGUCGCG---------------CCU----------GGgGCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 766 0.66 0.408163
Target:  5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 887 0.68 0.30485
Target:  5'- gGCCcGCGcCGGggccGCCgCGGCCGCcgGCCGc -3'
miRNA:   3'- gCGGuCGC-GCC----UGGgGCCGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 924 0.73 0.149188
Target:  5'- cCGCCGGCGcCGGGaagCCCGaGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCGC-GCCUg--GGGC-C-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 979 0.68 0.3183
Target:  5'- gGCCGGCGgGGcuuccGCCgCGGCgGCGgCAc -3'
miRNA:   3'- gCGGUCGCgCC-----UGGgGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 1055 0.71 0.198418
Target:  5'- gCGUCuccCGCGGGCCCUGGuCCGCGucCCAg -3'
miRNA:   3'- -GCGGuc-GCGCCUGGGGCC-GGCGU--GGU- -5'
6683 3' -66.4 NC_001847.1 + 1090 0.69 0.2855
Target:  5'- aCGCCgGGCGcCGcGGCCgCgGGCgGCGCCGc -3'
miRNA:   3'- -GCGG-UCGC-GC-CUGG-GgCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 1145 0.72 0.168188
Target:  5'- gCGCCucGGCGCGcGGCUCCGGCaGCGCg- -3'
miRNA:   3'- -GCGG--UCGCGC-CUGGGGCCGgCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 1222 0.66 0.423778
Target:  5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3'
miRNA:   3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 1411 0.66 0.441447
Target:  5'- aGgCAGgcaCGCGG-CCCCGcGCCcCGCCAg -3'
miRNA:   3'- gCgGUC---GCGCCuGGGGC-CGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 1427 0.69 0.29184
Target:  5'- cCGCgGuGCGCGGGCCCaGGCgCGUGgCCAc -3'
miRNA:   3'- -GCGgU-CGCGCCUGGGgCCG-GCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 1513 0.68 0.29829
Target:  5'- aGCC-GCGCGuaggcGGCCUCGGCgCGCGCgAa -3'
miRNA:   3'- gCGGuCGCGC-----CUGGGGCCG-GCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 1563 0.66 0.40009
Target:  5'- gCGCC-GCGa-GGCCagcaCGGCgCGCGCCAg -3'
miRNA:   3'- -GCGGuCGCgcCUGGg---GCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 1604 0.71 0.193826
Target:  5'- gGCCAGCGCGcGgcgcacugcGCCgCGGCaGCACCGc -3'
miRNA:   3'- gCGGUCGCGC-C---------UGGgGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 1924 0.68 0.309507
Target:  5'- cCGCCgcGGCGCGGcggccACUCgGGCCGCcggcgcucguccucGCCGg -3'
miRNA:   3'- -GCGG--UCGCGCC-----UGGGgCCGGCG--------------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 1979 0.75 0.10235
Target:  5'- cCGCCAGCGCcu-CCCCGGCagcgggucguagaGCACCAc -3'
miRNA:   3'- -GCGGUCGCGccuGGGGCCGg------------CGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.