miRNA display CGI


Results 1 - 20 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 135067 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134904 0.7 0.249732
Target:  5'- gCGCCgggcgucggGGCGCGaGGCCCgGGCUcgggcccccggGCGCCGg -3'
miRNA:   3'- -GCGG---------UCGCGC-CUGGGgCCGG-----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134862 0.68 0.325191
Target:  5'- gCGCCcGCGCGGG-CUCGGCgGCcCCc -3'
miRNA:   3'- -GCGGuCGCGCCUgGGGCCGgCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 134781 0.7 0.233278
Target:  5'- gCGCgCGGgGCGGGCCCCGgGgCGCgaaGCCc -3'
miRNA:   3'- -GCG-GUCgCGCCUGGGGC-CgGCG---UGGu -5'
6683 3' -66.4 NC_001847.1 + 134511 0.74 0.124032
Target:  5'- gGCCucgggggcggggggaGGCGCGGGCCgCGcGCCGCugCGg -3'
miRNA:   3'- gCGG---------------UCGCGCCUGGgGC-CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 134383 0.69 0.279269
Target:  5'- cCGCCGGCgGCGGGCC--GGCCuCGCCc -3'
miRNA:   3'- -GCGGUCG-CGCCUGGggCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 134250 0.75 0.108611
Target:  5'- gGCCGGCggccGCGGcgGCCCCGGCgCGgGCCGc -3'
miRNA:   3'- gCGGUCG----CGCC--UGGGGCCG-GCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134205 0.7 0.238659
Target:  5'- uCGUCcccgGGCGCGGGCUCgGGCUucccgGCGCCGg -3'
miRNA:   3'- -GCGG----UCGCGCCUGGGgCCGG-----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134174 0.68 0.30485
Target:  5'- gGCCGGCGCauaGACgCCCGG-CGCAgCGu -3'
miRNA:   3'- gCGGUCGCGc--CUG-GGGCCgGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 134163 0.72 0.168188
Target:  5'- cCGCCGGCgGCGGAagccCCgCCGGCCcggGUGCCGg -3'
miRNA:   3'- -GCGGUCG-CGCCU----GG-GGCCGG---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134025 0.7 0.233278
Target:  5'- cCGCUGGUGCuGGagGCCgCGGCgGCGCCGc -3'
miRNA:   3'- -GCGGUCGCG-CC--UGGgGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133963 0.71 0.198418
Target:  5'- uGCCGGcCGCGGcggugGCCUucugcgCGGCCGCGCUg -3'
miRNA:   3'- gCGGUC-GCGCC-----UGGG------GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 133777 0.68 0.324497
Target:  5'- uGCCGGCGCucgacgggcgcaaGGACa-UGGCCGCGCa- -3'
miRNA:   3'- gCGGUCGCG-------------CCUGggGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 133729 0.75 0.10596
Target:  5'- cCGCCAcCGCGGugCCCGuGCCGCcgcgcgaguACCGg -3'
miRNA:   3'- -GCGGUcGCGCCugGGGC-CGGCG---------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 133640 0.72 0.184485
Target:  5'- cCGCCuacGCGCGGcucuACCCCGaggcgccGCCGCugCGg -3'
miRNA:   3'- -GCGGu--CGCGCC----UGGGGC-------CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 133593 0.66 0.441447
Target:  5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3'
miRNA:   3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133549 0.69 0.261226
Target:  5'- gCGCCGcGCGCuGGCCCgagcggcgcgcUGGCgCGCGCCGu -3'
miRNA:   3'- -GCGGU-CGCGcCUGGG-----------GCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133457 0.67 0.360543
Target:  5'- aCGCC---GUGGACCCCgagaacuGGCCGCGCg- -3'
miRNA:   3'- -GCGGucgCGCCUGGGG-------CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 133284 0.67 0.353853
Target:  5'- aGCC-GCGCGGugcGCUCCGGCgcagagugCGUGCCGc -3'
miRNA:   3'- gCGGuCGCGCC---UGGGGCCG--------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133255 0.67 0.346523
Target:  5'- gCGCUcgcGGCGCuGGGCaaCCGGCUGCugCu -3'
miRNA:   3'- -GCGG---UCGCG-CCUGg-GGCCGGCGugGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.