miRNA display CGI


Results 1 - 20 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 123247 1.07 0.000414
Target:  5'- gCGCCAGCGCGGACCCCGGCCGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 85086 0.88 0.012682
Target:  5'- gCGCCGcGCGCGGACCCgCGGCCGcCACCGc -3'
miRNA:   3'- -GCGGU-CGCGCCUGGG-GCCGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 76359 0.84 0.022442
Target:  5'- cCGCCGGgGCGGACCCCGGUCGCcucuucacgGCCu -3'
miRNA:   3'- -GCGGUCgCGCCUGGGGCCGGCG---------UGGu -5'
6683 3' -66.4 NC_001847.1 + 65519 0.84 0.023633
Target:  5'- gCGCgCAGUGCGGcCgCCCGGCCGCGCCGc -3'
miRNA:   3'- -GCG-GUCGCGCCuG-GGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 36968 0.83 0.026207
Target:  5'- gGCCAGCGCGGGCgCCGGCgagcgggccCGCGCCGa -3'
miRNA:   3'- gCGGUCGCGCCUGgGGCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3909 0.83 0.026892
Target:  5'- aGCCAGCGCGGGCgCCGGuuGCGCg- -3'
miRNA:   3'- gCGGUCGCGCCUGgGGCCggCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 106722 0.83 0.026892
Target:  5'- aGCCAGCGCGGGCgCCGGuuGCGCg- -3'
miRNA:   3'- gCGGUCGCGCCUGgGGCCggCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 86958 0.83 0.029815
Target:  5'- cCGCCGGCGCGGcacagcaggacGCCgCCGGCCGgGCCGg -3'
miRNA:   3'- -GCGGUCGCGCC-----------UGG-GGCCGGCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 85050 0.82 0.03221
Target:  5'- cCGcCCGGCGCGGcaGCCuuGGCCGCGCCc -3'
miRNA:   3'- -GC-GGUCGCGCC--UGGggCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 29352 0.81 0.039561
Target:  5'- -uCCAGCGCGcGGCCCCGGCgGCGCUg -3'
miRNA:   3'- gcGGUCGCGC-CUGGGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132165 0.81 0.039561
Target:  5'- -uCCAGCGCGcGGCCCCGGCgGCGCUg -3'
miRNA:   3'- gcGGUCGCGC-CUGGGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 9716 0.81 0.042722
Target:  5'- aGCCAcGCGCGGGuCCuCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGU-CGCGCCU-GG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 50071 0.8 0.046962
Target:  5'- gCGCgCGGCGCGGACCCgGGCgcggccaaggcugcCGCGCCGg -3'
miRNA:   3'- -GCG-GUCGCGCCUGGGgCCG--------------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 78251 0.8 0.049675
Target:  5'- cCGCCGGCgucgccgucgccgGCGGGCCCguUGGCCGCGCCc -3'
miRNA:   3'- -GCGGUCG-------------CGCCUGGG--GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 120978 0.8 0.049802
Target:  5'- uGCCuuuAGCGCGGccGCCCCGGCCGCcgcugcgcaGCCGg -3'
miRNA:   3'- gCGG---UCGCGCC--UGGGGCCGGCG---------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 2580 0.79 0.051088
Target:  5'- gCGCCuGCGCGGccGCCgCGGCCGCACgCGa -3'
miRNA:   3'- -GCGGuCGCGCC--UGGgGCCGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 66675 0.79 0.051088
Target:  5'- gCGCCcGCGCGGcgggGCCCCGGCCGCGg-- -3'
miRNA:   3'- -GCGGuCGCGCC----UGGGGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 21632 0.79 0.052406
Target:  5'- gGCCGGCGCGGGCcgcgCCCGGgCGCgACCGg -3'
miRNA:   3'- gCGGUCGCGCCUG----GGGCCgGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 124445 0.79 0.052406
Target:  5'- gGCCGGCGCGGGCcgcgCCCGGgCGCgACCGg -3'
miRNA:   3'- gCGGUCGCGCCUG----GGGCCgGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 129763 0.79 0.059058
Target:  5'- cCGCCGGCcgcuCGGACcgccggagccugggCCCGGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGc---GCCUG--------------GGGCCGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.