miRNA display CGI


Results 1 - 20 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 6287 0.65 0.447428
Target:  5'- gCGCaGGCaGCGGACCUCGGCgaggucggccucgaUGCGCg- -3'
miRNA:   3'- -GCGgUCG-CGCCUGGGGCCG--------------GCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 21922 0.65 0.447428
Target:  5'- cCGCgGGCGaggcggaggagaGGACCgCGGCUcgcggcgGCACCGg -3'
miRNA:   3'- -GCGgUCGCg-----------CCUGGgGCCGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 45629 0.66 0.408163
Target:  5'- aCGUUGGgGCGGGCCUCG-CUGCGCa- -3'
miRNA:   3'- -GCGGUCgCGCCUGGGGCcGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 129492 0.66 0.40573
Target:  5'- gCGCCuGgGCGGGCCUUcaaagggucuauaaGGCgaGCACCGu -3'
miRNA:   3'- -GCGGuCgCGCCUGGGG--------------CCGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 99695 0.66 0.40009
Target:  5'- gCGCgCGGCGCGGGCCgCCGuaaaGUCaGCGCg- -3'
miRNA:   3'- -GCG-GUCGCGCCUGG-GGC----CGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 38833 0.66 0.40009
Target:  5'- uGCCGcCGCcGGCCCCGccauuGCCGcCGCCGg -3'
miRNA:   3'- gCGGUcGCGcCUGGGGC-----CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 93806 0.66 0.40009
Target:  5'- gGCC-GCGCGGccgaguCCCCGcuggacuuugcGCCGCGCgAg -3'
miRNA:   3'- gCGGuCGCGCCu-----GGGGC-----------CGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 30432 0.66 0.40009
Target:  5'- gGCgGGCGCGGagGCgCCggGGCUGCACgAg -3'
miRNA:   3'- gCGgUCGCGCC--UGgGG--CCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 103579 0.66 0.408163
Target:  5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 81311 0.66 0.408163
Target:  5'- gCGCCGGCucuucaGCGcccccGCUCCGGC-GCGCCAg -3'
miRNA:   3'- -GCGGUCG------CGCc----UGGGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 96557 0.66 0.40009
Target:  5'- aGCCGcgcGCGCGGuCUgCUGGCCGUguGCCu -3'
miRNA:   3'- gCGGU---CGCGCCuGG-GGCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 31633 0.66 0.407351
Target:  5'- gCGCUAGUgcacuuuguuucgGCGGGCCCgGaGCCcgcGCGCCc -3'
miRNA:   3'- -GCGGUCG-------------CGCCUGGGgC-CGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 27184 0.66 0.40009
Target:  5'- uGUCGGCGgGGugCUucagcguuaggaCGGgCGCGCCGg -3'
miRNA:   3'- gCGGUCGCgCCugGG------------GCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 39876 0.66 0.40009
Target:  5'- uGCCGGCGC---CCCCGaUCGCGCCc -3'
miRNA:   3'- gCGGUCGCGccuGGGGCcGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 53780 0.66 0.40009
Target:  5'- aGCuaugCAGCGUGGGCCaguaCCuGCCGCACg- -3'
miRNA:   3'- gCG----GUCGCGCCUGG----GGcCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 114434 0.66 0.40009
Target:  5'- cCGCCAGCG-GGGCCUCGuCCucguaGCACUc -3'
miRNA:   3'- -GCGGUCGCgCCUGGGGCcGG-----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 16896 0.66 0.407351
Target:  5'- aCGCC-GCGCaGGuuuaccaGCCCgGGCCGCucggcgcagacGCCGg -3'
miRNA:   3'- -GCGGuCGCG-CC-------UGGGgCCGGCG-----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 79757 0.66 0.40009
Target:  5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3'
miRNA:   3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 113355 0.66 0.40009
Target:  5'- gGCC--CGgGGACccgcgCCCGGCCgGCGCCGg -3'
miRNA:   3'- gCGGucGCgCCUG-----GGGCCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 104376 0.66 0.40009
Target:  5'- gCGCC-GCGa-GGCCagcaCGGCgCGCGCCAg -3'
miRNA:   3'- -GCGGuCGCgcCUGGg---GCCG-GCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.