Results 1 - 20 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 21922 | 0.65 | 0.447428 |
Target: 5'- cCGCgGGCGaggcggaggagaGGACCgCGGCUcgcggcgGCACCGg -3' miRNA: 3'- -GCGgUCGCg-----------CCUGGgGCCGG-------CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 6287 | 0.65 | 0.447428 |
Target: 5'- gCGCaGGCaGCGGACCUCGGCgaggucggccucgaUGCGCg- -3' miRNA: 3'- -GCGgUCG-CGCCUGGGGCCG--------------GCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 31633 | 0.66 | 0.407351 |
Target: 5'- gCGCUAGUgcacuuuguuucgGCGGGCCCgGaGCCcgcGCGCCc -3' miRNA: 3'- -GCGGUCG-------------CGCCUGGGgC-CGG---CGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 53780 | 0.66 | 0.40009 |
Target: 5'- aGCuaugCAGCGUGGGCCaguaCCuGCCGCACg- -3' miRNA: 3'- gCG----GUCGCGCCUGG----GGcCGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 79757 | 0.66 | 0.40009 |
Target: 5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3' miRNA: 3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 129492 | 0.66 | 0.40573 |
Target: 5'- gCGCCuGgGCGGGCCUUcaaagggucuauaaGGCgaGCACCGu -3' miRNA: 3'- -GCGGuCgCGCCUGGGG--------------CCGg-CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 99695 | 0.66 | 0.40009 |
Target: 5'- gCGCgCGGCGCGGGCCgCCGuaaaGUCaGCGCg- -3' miRNA: 3'- -GCG-GUCGCGCCUGG-GGC----CGG-CGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 16896 | 0.66 | 0.407351 |
Target: 5'- aCGCC-GCGCaGGuuuaccaGCCCgGGCCGCucggcgcagacGCCGg -3' miRNA: 3'- -GCGGuCGCG-CC-------UGGGgCCGGCG-----------UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 96557 | 0.66 | 0.40009 |
Target: 5'- aGCCGcgcGCGCGGuCUgCUGGCCGUguGCCu -3' miRNA: 3'- gCGGU---CGCGCCuGG-GGCCGGCG--UGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 69396 | 0.66 | 0.399289 |
Target: 5'- uGCCGGCggccuuuGCGGGCCCgGcGCUGUuCCu -3' miRNA: 3'- gCGGUCG-------CGCCUGGGgC-CGGCGuGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 113355 | 0.66 | 0.40009 |
Target: 5'- gGCC--CGgGGACccgcgCCCGGCCgGCGCCGg -3' miRNA: 3'- gCGGucGCgCCUG-----GGGCCGG-CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 40383 | 0.66 | 0.40009 |
Target: 5'- aGCggggGGCGaCGG-CCCCGGCCaagacGCGCCc -3' miRNA: 3'- gCGg---UCGC-GCCuGGGGCCGG-----CGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 114434 | 0.66 | 0.40009 |
Target: 5'- cCGCCAGCG-GGGCCUCGuCCucguaGCACUc -3' miRNA: 3'- -GCGGUCGCgCCUGGGGCcGG-----CGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 38833 | 0.66 | 0.40009 |
Target: 5'- uGCCGcCGCcGGCCCCGccauuGCCGcCGCCGg -3' miRNA: 3'- gCGGUcGCGcCUGGGGC-----CGGC-GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 39876 | 0.66 | 0.40009 |
Target: 5'- uGCCGGCGC---CCCCGaUCGCGCCc -3' miRNA: 3'- gCGGUCGCGccuGGGGCcGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 30432 | 0.66 | 0.40009 |
Target: 5'- gGCgGGCGCGGagGCgCCggGGCUGCACgAg -3' miRNA: 3'- gCGgUCGCGCC--UGgGG--CCGGCGUGgU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 81311 | 0.66 | 0.408163 |
Target: 5'- gCGCCGGCucuucaGCGcccccGCUCCGGC-GCGCCAg -3' miRNA: 3'- -GCGGUCG------CGCc----UGGGGCCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 27184 | 0.66 | 0.40009 |
Target: 5'- uGUCGGCGgGGugCUucagcguuaggaCGGgCGCGCCGg -3' miRNA: 3'- gCGGUCGCgCCugGG------------GCCgGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 45629 | 0.66 | 0.408163 |
Target: 5'- aCGUUGGgGCGGGCCUCG-CUGCGCa- -3' miRNA: 3'- -GCGGUCgCGCCUGGGGCcGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 103579 | 0.66 | 0.408163 |
Target: 5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3' miRNA: 3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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