miRNA display CGI


Results 1 - 20 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 69318 0.76 0.089041
Target:  5'- uGCCuuuugGGCGCGGGCCUCGGgCGCugCu -3'
miRNA:   3'- gCGG-----UCGCGCCUGGGGCCgGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 105616 0.78 0.065856
Target:  5'- cCGCgAGCGCGG-CCgCCaGCCGCGCCGg -3'
miRNA:   3'- -GCGgUCGCGCCuGG-GGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132375 0.78 0.065856
Target:  5'- cCGCCGGCGgGGGCgCCGGCgccggcgccgcCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCgCCUGgGGCCG-----------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 105686 0.78 0.067541
Target:  5'- gGCCGacGCGCGGGCCgCCGcGCCGCGCg- -3'
miRNA:   3'- gCGGU--CGCGCCUGG-GGC-CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 32130 0.78 0.071039
Target:  5'- cCGCCGGCGCuGGGCgCC-GCCGCGCCc -3'
miRNA:   3'- -GCGGUCGCG-CCUGgGGcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131222 0.77 0.072852
Target:  5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 92419 0.77 0.074709
Target:  5'- cCGCCcGCGCGG-CCgCCcGCCGCGCCAa -3'
miRNA:   3'- -GCGGuCGCGCCuGG-GGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 48836 0.77 0.076612
Target:  5'- uGCC-GCGCGGgggcGCCUCGGCCGCGCg- -3'
miRNA:   3'- gCGGuCGCGCC----UGGGGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 97820 0.76 0.084698
Target:  5'- aCGCCAGCGCuGugCUCGGCgCGCGCgGg -3'
miRNA:   3'- -GCGGUCGCGcCugGGGCCG-GCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 59313 0.78 0.065856
Target:  5'- uGCCAGgGCGcGGCgCCGGCgGCGCCGu -3'
miRNA:   3'- gCGGUCgCGC-CUGgGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133053 0.79 0.05951
Target:  5'- cCGCCGccGCGCGGGCCCCGcggggcgcucGCCGcCACCGc -3'
miRNA:   3'- -GCGGU--CGCGCCUGGGGC----------CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 124445 0.79 0.052406
Target:  5'- gGCCGGCGCGGGCcgcgCCCGGgCGCgACCGg -3'
miRNA:   3'- gCGGUCGCGCCUG----GGGCCgGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 76359 0.84 0.022442
Target:  5'- cCGCCGGgGCGGACCCCGGUCGCcucuucacgGCCu -3'
miRNA:   3'- -GCGGUCgCGCCUGGGGCCGGCG---------UGGu -5'
6683 3' -66.4 NC_001847.1 + 36968 0.83 0.026207
Target:  5'- gGCCAGCGCGGGCgCCGGCgagcgggccCGCGCCGa -3'
miRNA:   3'- gCGGUCGCGCCUGgGGCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 106722 0.83 0.026892
Target:  5'- aGCCAGCGCGGGCgCCGGuuGCGCg- -3'
miRNA:   3'- gCGGUCGCGCCUGgGGCCggCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 132165 0.81 0.039561
Target:  5'- -uCCAGCGCGcGGCCCCGGCgGCGCUg -3'
miRNA:   3'- gcGGUCGCGC-CUGGGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 9716 0.81 0.042722
Target:  5'- aGCCAcGCGCGGGuCCuCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGU-CGCGCCU-GG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 50071 0.8 0.046962
Target:  5'- gCGCgCGGCGCGGACCCgGGCgcggccaaggcugcCGCGCCGg -3'
miRNA:   3'- -GCG-GUCGCGCCUGGGgCCG--------------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 120978 0.8 0.049802
Target:  5'- uGCCuuuAGCGCGGccGCCCCGGCCGCcgcugcgcaGCCGg -3'
miRNA:   3'- gCGG---UCGCGCC--UGGGGCCGGCG---------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 2580 0.79 0.051088
Target:  5'- gCGCCuGCGCGGccGCCgCGGCCGCACgCGa -3'
miRNA:   3'- -GCGGuCGCGCC--UGGgGCCGGCGUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.