Results 1 - 20 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 21922 | 0.65 | 0.447428 |
Target: 5'- cCGCgGGCGaggcggaggagaGGACCgCGGCUcgcggcgGCACCGg -3' miRNA: 3'- -GCGgUCGCg-----------CCUGGgGCCGG-------CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 68 | 0.66 | 0.432981 |
Target: 5'- -uUCGGCGCGGcggGCCCgGGCC-CGCUc -3' miRNA: 3'- gcGGUCGCGCC---UGGGgCCGGcGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 101047 | 0.66 | 0.42461 |
Target: 5'- cCGCCGccGCGCGaGCCaCGGCgGcCGCCAc -3' miRNA: 3'- -GCGGU--CGCGCcUGGgGCCGgC-GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 85086 | 0.88 | 0.012682 |
Target: 5'- gCGCCGcGCGCGGACCCgCGGCCGcCACCGc -3' miRNA: 3'- -GCGGU-CGCGCCUGGG-GCCGGC-GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 123704 | 0.66 | 0.441447 |
Target: 5'- cCGCUGGCGCGGGgUCgcaCGGCaGCACUu -3' miRNA: 3'- -GCGGUCGCGCCUgGG---GCCGgCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 104045 | 0.66 | 0.441447 |
Target: 5'- uGCCAcCGCGcugCCCGGCCccaGCGCCGc -3' miRNA: 3'- gCGGUcGCGCcugGGGCCGG---CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 82509 | 0.66 | 0.441447 |
Target: 5'- gCGUCuGGCGCGG-CgCUCGcGCaCGCGCCGa -3' miRNA: 3'- -GCGG-UCGCGCCuG-GGGC-CG-GCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 30780 | 0.66 | 0.441447 |
Target: 5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3' miRNA: 3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 80346 | 0.66 | 0.440596 |
Target: 5'- uCGCCAGCGCGGcgcggaaGgCgCGGCgUGCGCa- -3' miRNA: 3'- -GCGGUCGCGCC-------UgGgGCCG-GCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 23734 | 0.66 | 0.432981 |
Target: 5'- gGCCgAGCGCcGcCCCUGGCgGgGCCu -3' miRNA: 3'- gCGG-UCGCGcCuGGGGCCGgCgUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 131432 | 0.66 | 0.432981 |
Target: 5'- gGCCGGCGCGcGCgaUuGCCGCGCCu -3' miRNA: 3'- gCGGUCGCGCcUGggGcCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 101553 | 0.66 | 0.441447 |
Target: 5'- aGCUGGCGCaGGACgUCGuCgGCACCGc -3' miRNA: 3'- gCGGUCGCG-CCUGgGGCcGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 132543 | 0.66 | 0.441447 |
Target: 5'- -uCCGGCGCGGcggGCUCgcgugCGGCCGCGgCGg -3' miRNA: 3'- gcGGUCGCGCC---UGGG-----GCCGGCGUgGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 115526 | 0.66 | 0.432981 |
Target: 5'- aCGCCGGCGCcccGGGCCC-GaGCuCGgGCCc -3' miRNA: 3'- -GCGGUCGCG---CCUGGGgC-CG-GCgUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 127020 | 0.66 | 0.441447 |
Target: 5'- cCGCCcGCcccugGGGCCCCGcGCCuGCGCUg -3' miRNA: 3'- -GCGGuCGcg---CCUGGGGC-CGG-CGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 15757 | 0.66 | 0.441447 |
Target: 5'- gCGCCaaaGGUGU--ACCCgCGaGCCGCGCCGa -3' miRNA: 3'- -GCGG---UCGCGccUGGG-GC-CGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 60803 | 0.66 | 0.432981 |
Target: 5'- gCGCCAccagcGCGCGcGCCUgCGGCagcgGCACCGu -3' miRNA: 3'- -GCGGU-----CGCGCcUGGG-GCCGg---CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 20087 | 0.66 | 0.430459 |
Target: 5'- cCG-CGGCGCGGcccggccaucgcuaGCCCgUGGCCGC-CCu -3' miRNA: 3'- -GCgGUCGCGCC--------------UGGG-GCCGGCGuGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 132455 | 0.66 | 0.441447 |
Target: 5'- aGCUggagGGCGCGGAggacgagccgaUgCCGGCCGaGCCGc -3' miRNA: 3'- gCGG----UCGCGCCU-----------GgGGCCGGCgUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 97327 | 0.66 | 0.441447 |
Target: 5'- gCGUCGGCGuCGcGCccgCCCGGCCGCGugUCAa -3' miRNA: 3'- -GCGGUCGC-GCcUG---GGGCCGGCGU--GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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