Results 21 - 40 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 133053 | 0.79 | 0.05951 |
Target: 5'- cCGCCGccGCGCGGGCCCCGcggggcgcucGCCGcCACCGc -3' miRNA: 3'- -GCGGU--CGCGCCUGGGGC----------CGGC-GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 30240 | 0.79 | 0.05951 |
Target: 5'- cCGCCGccGCGCGGGCCCCGcggggcgcucGCCGcCACCGc -3' miRNA: 3'- -GCGGU--CGCGCCUGGGGC----------CGGC-GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 50017 | 0.78 | 0.061038 |
Target: 5'- cCGCCuGC-UGGGCCCCGGgCGCGCCGu -3' miRNA: 3'- -GCGGuCGcGCCUGGGGCCgGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 2803 | 0.78 | 0.065856 |
Target: 5'- cCGCgAGCGCGG-CCgCCaGCCGCGCCGg -3' miRNA: 3'- -GCGgUCGCGCCuGG-GGcCGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 132375 | 0.78 | 0.065856 |
Target: 5'- cCGCCGGCGgGGGCgCCGGCgccggcgccgcCGCGCCGg -3' miRNA: 3'- -GCGGUCGCgCCUGgGGCCG-----------GCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 29562 | 0.78 | 0.065856 |
Target: 5'- cCGCCGGCGgGGGCgCCGGCgccggcgccgcCGCGCCGg -3' miRNA: 3'- -GCGGUCGCgCCUGgGGCCG-----------GCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 59313 | 0.78 | 0.065856 |
Target: 5'- uGCCAGgGCGcGGCgCCGGCgGCGCCGu -3' miRNA: 3'- gCGGUCgCGC-CUGgGGCCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 105616 | 0.78 | 0.065856 |
Target: 5'- cCGCgAGCGCGG-CCgCCaGCCGCGCCGg -3' miRNA: 3'- -GCGgUCGCGCCuGG-GGcCGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 87001 | 0.78 | 0.065856 |
Target: 5'- gCGCCGGCccgGCGGuuACCUgGGCCGCGCCu -3' miRNA: 3'- -GCGGUCG---CGCC--UGGGgCCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 2873 | 0.78 | 0.067541 |
Target: 5'- gGCCGacGCGCGGGCCgCCGcGCCGCGCg- -3' miRNA: 3'- gCGGU--CGCGCCUGG-GGC-CGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 105686 | 0.78 | 0.067541 |
Target: 5'- gGCCGacGCGCGGGCCgCCGcGCCGCGCg- -3' miRNA: 3'- gCGGU--CGCGCCUGG-GGC-CGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 32130 | 0.78 | 0.071039 |
Target: 5'- cCGCCGGCGCuGGGCgCC-GCCGCGCCc -3' miRNA: 3'- -GCGGUCGCG-CCUGgGGcCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 106405 | 0.77 | 0.072669 |
Target: 5'- aCGCaCGcGCGCGGcgacgcuGCCCgCGGCCGCGCCGc -3' miRNA: 3'- -GCG-GU-CGCGCC-------UGGG-GCCGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 28409 | 0.77 | 0.072852 |
Target: 5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3' miRNA: 3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 131222 | 0.77 | 0.072852 |
Target: 5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3' miRNA: 3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 92419 | 0.77 | 0.074709 |
Target: 5'- cCGCCcGCGCGG-CCgCCcGCCGCGCCAa -3' miRNA: 3'- -GCGGuCGCGCCuGG-GGcCGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 48836 | 0.77 | 0.076612 |
Target: 5'- uGCC-GCGCGGgggcGCCUCGGCCGCGCg- -3' miRNA: 3'- gCGGuCGCGCC----UGGGGCCGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 34106 | 0.77 | 0.078562 |
Target: 5'- gGCgGGUGCgcaaauugGGACCCCGGCCGCGgCGg -3' miRNA: 3'- gCGgUCGCG--------CCUGGGGCCGGCGUgGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 34298 | 0.77 | 0.078562 |
Target: 5'- gGCCGGCGCuccGGCCCUGGCCGgaGCCGc -3' miRNA: 3'- gCGGUCGCGc--CUGGGGCCGGCg-UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 75640 | 0.76 | 0.084698 |
Target: 5'- aGCCGGUGCGG-CCUCGGC-GCACCc -3' miRNA: 3'- gCGGUCGCGCCuGGGGCCGgCGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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