miRNA display CGI


Results 21 - 40 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 30240 0.79 0.05951
Target:  5'- cCGCCGccGCGCGGGCCCCGcggggcgcucGCCGcCACCGc -3'
miRNA:   3'- -GCGGU--CGCGCCUGGGGC----------CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133053 0.79 0.05951
Target:  5'- cCGCCGccGCGCGGGCCCCGcggggcgcucGCCGcCACCGc -3'
miRNA:   3'- -GCGGU--CGCGCCUGGGGC----------CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 50017 0.78 0.061038
Target:  5'- cCGCCuGC-UGGGCCCCGGgCGCGCCGu -3'
miRNA:   3'- -GCGGuCGcGCCUGGGGCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 87001 0.78 0.065856
Target:  5'- gCGCCGGCccgGCGGuuACCUgGGCCGCGCCu -3'
miRNA:   3'- -GCGGUCG---CGCC--UGGGgCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 2803 0.78 0.065856
Target:  5'- cCGCgAGCGCGG-CCgCCaGCCGCGCCGg -3'
miRNA:   3'- -GCGgUCGCGCCuGG-GGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 59313 0.78 0.065856
Target:  5'- uGCCAGgGCGcGGCgCCGGCgGCGCCGu -3'
miRNA:   3'- gCGGUCgCGC-CUGgGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 29562 0.78 0.065856
Target:  5'- cCGCCGGCGgGGGCgCCGGCgccggcgccgcCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCgCCUGgGGCCG-----------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 105616 0.78 0.065856
Target:  5'- cCGCgAGCGCGG-CCgCCaGCCGCGCCGg -3'
miRNA:   3'- -GCGgUCGCGCCuGG-GGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132375 0.78 0.065856
Target:  5'- cCGCCGGCGgGGGCgCCGGCgccggcgccgcCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCgCCUGgGGCCG-----------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 2873 0.78 0.067541
Target:  5'- gGCCGacGCGCGGGCCgCCGcGCCGCGCg- -3'
miRNA:   3'- gCGGU--CGCGCCUGG-GGC-CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 105686 0.78 0.067541
Target:  5'- gGCCGacGCGCGGGCCgCCGcGCCGCGCg- -3'
miRNA:   3'- gCGGU--CGCGCCUGG-GGC-CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 32130 0.78 0.071039
Target:  5'- cCGCCGGCGCuGGGCgCC-GCCGCGCCc -3'
miRNA:   3'- -GCGGUCGCG-CCUGgGGcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 106405 0.77 0.072669
Target:  5'- aCGCaCGcGCGCGGcgacgcuGCCCgCGGCCGCGCCGc -3'
miRNA:   3'- -GCG-GU-CGCGCC-------UGGG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 28409 0.77 0.072852
Target:  5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131222 0.77 0.072852
Target:  5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 92419 0.77 0.074709
Target:  5'- cCGCCcGCGCGG-CCgCCcGCCGCGCCAa -3'
miRNA:   3'- -GCGGuCGCGCCuGG-GGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 48836 0.77 0.076612
Target:  5'- uGCC-GCGCGGgggcGCCUCGGCCGCGCg- -3'
miRNA:   3'- gCGGuCGCGCC----UGGGGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 34106 0.77 0.078562
Target:  5'- gGCgGGUGCgcaaauugGGACCCCGGCCGCGgCGg -3'
miRNA:   3'- gCGgUCGCG--------CCUGGGGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 34298 0.77 0.078562
Target:  5'- gGCCGGCGCuccGGCCCUGGCCGgaGCCGc -3'
miRNA:   3'- gCGGUCGCGc--CUGGGGCCGGCg-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 97820 0.76 0.084698
Target:  5'- aCGCCAGCGCuGugCUCGGCgCGCGCgGg -3'
miRNA:   3'- -GCGGUCGCGcCugGGGCCG-GCGUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.