miRNA display CGI


Results 21 - 40 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 132543 0.66 0.441447
Target:  5'- -uCCGGCGCGGcggGCUCgcgugCGGCCGCGgCGg -3'
miRNA:   3'- gcGGUCGCGCC---UGGG-----GCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 80346 0.66 0.440596
Target:  5'- uCGCCAGCGCGGcgcggaaGgCgCGGCgUGCGCa- -3'
miRNA:   3'- -GCGGUCGCGCC-------UgGgGCCG-GCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 121225 0.66 0.43551
Target:  5'- aCGCCGuCGCGGgccucccggaacuccACCaggaacaCCGGgCGCACCAg -3'
miRNA:   3'- -GCGGUcGCGCC---------------UGG-------GGCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 33890 0.66 0.432981
Target:  5'- cCGCC-GCGCGuGGCCgCGGgCGUGCa- -3'
miRNA:   3'- -GCGGuCGCGC-CUGGgGCCgGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 115526 0.66 0.432981
Target:  5'- aCGCCGGCGCcccGGGCCC-GaGCuCGgGCCc -3'
miRNA:   3'- -GCGGUCGCG---CCUGGGgC-CG-GCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 126547 0.66 0.432981
Target:  5'- gGCCgAGCGCcGcCCCUGGCgGgGCCu -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGgCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 23734 0.66 0.432981
Target:  5'- gGCCgAGCGCcGcCCCUGGCgGgGCCu -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGgCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 131432 0.66 0.432981
Target:  5'- gGCCGGCGCGcGCgaUuGCCGCGCCu -3'
miRNA:   3'- gCGGUCGCGCcUGggGcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 68 0.66 0.432981
Target:  5'- -uUCGGCGCGGcggGCCCgGGCC-CGCUc -3'
miRNA:   3'- gcGGUCGCGCC---UGGGgCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 33798 0.66 0.432981
Target:  5'- gGCU-GCGCGcGGCgCCCGGC-GCGCUg -3'
miRNA:   3'- gCGGuCGCGC-CUG-GGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 102078 0.66 0.432981
Target:  5'- gGCaGGCGCGGGCcgcgcgcgaCCCGGUCaauaaacuccuGCGCCGc -3'
miRNA:   3'- gCGgUCGCGCCUG---------GGGCCGG-----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 60803 0.66 0.432981
Target:  5'- gCGCCAccagcGCGCGcGCCUgCGGCagcgGCACCGu -3'
miRNA:   3'- -GCGGU-----CGCGCcUGGG-GCCGg---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 99445 0.66 0.432981
Target:  5'- gCGCCAGCGUGGGagUUGcGCagCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCGCCUggGGC-CG--GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102881 0.66 0.432981
Target:  5'- -uUCGGCGCGGcggGCCCgGGCC-CGCUc -3'
miRNA:   3'- gcGGUCGCGCC---UGGGgCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 49032 0.66 0.432981
Target:  5'- uGCCAGCgGCGaGCCgUGGUgGCGCgCAg -3'
miRNA:   3'- gCGGUCG-CGCcUGGgGCCGgCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 20087 0.66 0.430459
Target:  5'- cCG-CGGCGCGGcccggccaucgcuaGCCCgUGGCCGC-CCu -3'
miRNA:   3'- -GCgGUCGCGCC--------------UGGG-GCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 89967 0.66 0.42461
Target:  5'- uGCCAGCGCGcGGCggaagCGGUgcugCGCGCCGc -3'
miRNA:   3'- gCGGUCGCGC-CUGgg---GCCG----GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 74408 0.66 0.42461
Target:  5'- cCGCCGcgcgcGCGCGGGCCgCCGacguaaUGUACCAc -3'
miRNA:   3'- -GCGGU-----CGCGCCUGG-GGCcg----GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 113438 0.66 0.42461
Target:  5'- uGCUGGCGCuGGuCCuCCGGCUccuCGCCGg -3'
miRNA:   3'- gCGGUCGCG-CCuGG-GGCCGGc--GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 85858 0.66 0.42461
Target:  5'- uCGCUGGCGCGGAUguuauaCGGCgCGgACCu -3'
miRNA:   3'- -GCGGUCGCGCCUGgg----GCCG-GCgUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.