miRNA display CGI


Results 41 - 60 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 82093 0.66 0.42461
Target:  5'- gGCCaAGCGCGGGgCCaGGCuCGgaGCCGa -3'
miRNA:   3'- gCGG-UCGCGCCUgGGgCCG-GCg-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 46925 0.66 0.42461
Target:  5'- gCGUCgGGCcCGGGCUCCgGGCCGCgugcggcgaaGCCAa -3'
miRNA:   3'- -GCGG-UCGcGCCUGGGG-CCGGCG----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 84143 0.66 0.42461
Target:  5'- aGCUGGCGUGGuccguaaucgcGCgCUCGaGCUGCGCCGc -3'
miRNA:   3'- gCGGUCGCGCC-----------UG-GGGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 89967 0.66 0.42461
Target:  5'- uGCCAGCGCGcGGCggaagCGGUgcugCGCGCCGc -3'
miRNA:   3'- gCGGUCGCGC-CUGgg---GCCG----GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 113438 0.66 0.42461
Target:  5'- uGCUGGCGCuGGuCCuCCGGCUccuCGCCGg -3'
miRNA:   3'- gCGGUCGCG-CCuGG-GGCCGGc--GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 74408 0.66 0.42461
Target:  5'- cCGCCGcgcgcGCGCGGGCCgCCGacguaaUGUACCAc -3'
miRNA:   3'- -GCGGU-----CGCGCCUGG-GGCcg----GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 85858 0.66 0.42461
Target:  5'- uCGCUGGCGCGGAUguuauaCGGCgCGgACCu -3'
miRNA:   3'- -GCGGUCGCGCCUGgg----GCCG-GCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 121204 0.66 0.42461
Target:  5'- uGCgCGGgGCGGcCCCCcuGCCGCGgCGc -3'
miRNA:   3'- gCG-GUCgCGCCuGGGGc-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 121991 0.66 0.42461
Target:  5'- uGCCAGCaGCccaACCgCCGGCCGCGg-- -3'
miRNA:   3'- gCGGUCG-CGcc-UGG-GGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 27909 0.66 0.423778
Target:  5'- gGCCgagggggcggagGGCGCGGaggacgcggacagGCCUgGGCCGCGgCGc -3'
miRNA:   3'- gCGG------------UCGCGCC-------------UGGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 1222 0.66 0.423778
Target:  5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3'
miRNA:   3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 106653 0.66 0.423778
Target:  5'- gCGCUAGCgGCGGcGCCgCGGCguccgcggcgcguCGUGCCAc -3'
miRNA:   3'- -GCGGUCG-CGCC-UGGgGCCG-------------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 104035 0.66 0.423778
Target:  5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3'
miRNA:   3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 7445 0.66 0.421289
Target:  5'- uCGCUAGCGCGGACCUacuacaucugccagCGgaacaucgaguGCCucucaaaGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGG--------------GC-----------CGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40960 0.66 0.41716
Target:  5'- gGCCAGCGacgugccgacgagcaGGuuGCgCCgGGCCGCGCUc -3'
miRNA:   3'- gCGGUCGCg--------------CC--UG-GGgCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 43291 0.66 0.416337
Target:  5'- gCGCguGCGCGGGCUgCGGaguacgaagcgCGCGCUg -3'
miRNA:   3'- -GCGguCGCGCCUGGgGCCg----------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 104972 0.66 0.416337
Target:  5'- gCGCCAGgGCucggGGAagagcgggugguCCgCGaGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCgCG----CCU------------GGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 29392 0.66 0.416337
Target:  5'- uGCCGcGCGCGaGGCCCUccuaaccuGGUuugaccugCGCGCCAg -3'
miRNA:   3'- gCGGU-CGCGC-CUGGGG--------CCG--------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 86585 0.66 0.416337
Target:  5'- aCGgCGGCGCuucguucuuuacGcGGCUCCGGgCGCGCCu -3'
miRNA:   3'- -GCgGUCGCG------------C-CUGGGGCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 80691 0.66 0.416337
Target:  5'- gCGCCGGCgGCGG-CUgCGGCUGgaagaagcaCACCGg -3'
miRNA:   3'- -GCGGUCG-CGCCuGGgGCCGGC---------GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.