miRNA display CGI


Results 61 - 80 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 30916 0.66 0.416337
Target:  5'- cCGCgCAcCGCGGugCCCGuGCCccgcgcgaGUACCGg -3'
miRNA:   3'- -GCG-GUcGCGCCugGGGC-CGG--------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 114147 0.66 0.416337
Target:  5'- aGCCGcGCGCGGugCCgauugggaGGCCuagugcgcGCGCCc -3'
miRNA:   3'- gCGGU-CGCGCCugGGg-------CCGG--------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 32427 0.66 0.416337
Target:  5'- aGCCggggGGUGCGGGCCUUucGCCGC-CCGc -3'
miRNA:   3'- gCGG----UCGCGCCUGGGGc-CGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 58560 0.66 0.416337
Target:  5'- cCGCCAGCgGCGGcgaagaucgggGgCCgGGCCGCcgGCUg -3'
miRNA:   3'- -GCGGUCG-CGCC-----------UgGGgCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 60966 0.66 0.416337
Target:  5'- gCGCC-GCGCGGcauggGCCCCacGCCgagagGCGCCGc -3'
miRNA:   3'- -GCGGuCGCGCC-----UGGGGc-CGG-----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 2159 0.66 0.416337
Target:  5'- gCGCCAGgGCucggGGAagagcgggugguCCgCGaGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCgCG----CCU------------GGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 69131 0.66 0.416337
Target:  5'- gGuCCAGCGCGG-CCgCCGuGgCGUGCCc -3'
miRNA:   3'- gC-GGUCGCGCCuGG-GGC-CgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 99687 0.66 0.416337
Target:  5'- gCGCCucucGCGcCGcGGCCgcgUCGcGCCGCACCGu -3'
miRNA:   3'- -GCGGu---CGC-GC-CUGG---GGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 32902 0.66 0.416337
Target:  5'- gGCCGGCGgGGAagCCggGGCCGCggacgggaggagGCCGg -3'
miRNA:   3'- gCGGUCGCgCCUggGG--CCGGCG------------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 15023 0.66 0.416337
Target:  5'- gGCC-GCGCGaGCCgCGGCCGC-CgGg -3'
miRNA:   3'- gCGGuCGCGCcUGGgGCCGGCGuGgU- -5'
6683 3' -66.4 NC_001847.1 + 80691 0.66 0.416337
Target:  5'- gCGCCGGCgGCGG-CUgCGGCUGgaagaagcaCACCGg -3'
miRNA:   3'- -GCGGUCG-CGCCuGGgGCCGGC---------GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 95827 0.66 0.416337
Target:  5'- gCGaCCAGCGCGgcuucGugUCCGuGCUGCACaCGa -3'
miRNA:   3'- -GC-GGUCGCGC-----CugGGGC-CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 29392 0.66 0.416337
Target:  5'- uGCCGcGCGCGaGGCCCUccuaaccuGGUuugaccugCGCGCCAg -3'
miRNA:   3'- gCGGU-CGCGC-CUGGGG--------CCG--------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 91660 0.66 0.413874
Target:  5'- aCGgCGGCGCGGcgggacgcgaucgcGCgCUCGGCgacCGCGCCGu -3'
miRNA:   3'- -GCgGUCGCGCC--------------UG-GGGCCG---GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 81311 0.66 0.408163
Target:  5'- gCGCCGGCucuucaGCGcccccGCUCCGGC-GCGCCAg -3'
miRNA:   3'- -GCGGUCG------CGCc----UGGGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 119896 0.66 0.408163
Target:  5'- uCGCguGCGUGGccgccgccGCCgCCGGCgCGUACUu -3'
miRNA:   3'- -GCGguCGCGCC--------UGG-GGCCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 124934 0.66 0.408163
Target:  5'- aGCgGGCGCGcccuGGgCCCGGCgGCGgCGg -3'
miRNA:   3'- gCGgUCGCGC----CUgGGGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 43393 0.66 0.408163
Target:  5'- gCGCCcgcggaccgaugGGCguacGCGGACCUCGcGCUGCugCu -3'
miRNA:   3'- -GCGG------------UCG----CGCCUGGGGC-CGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 32281 0.66 0.408163
Target:  5'- gCGCCguccgcguGGCGCGG-CCCCGcgacGCCGcCGCgGa -3'
miRNA:   3'- -GCGG--------UCGCGCCuGGGGC----CGGC-GUGgU- -5'
6683 3' -66.4 NC_001847.1 + 30597 0.66 0.408163
Target:  5'- cCGCCGcGUaGCGG-CCCCGgggccGCCGCGCa- -3'
miRNA:   3'- -GCGGU-CG-CGCCuGGGGC-----CGGCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.