miRNA display CGI


Results 41 - 60 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 3989 0.71 0.189327
Target:  5'- gGCCgGGCGCGcGGCCCCGcggggcGCCGgGCCc -3'
miRNA:   3'- gCGG-UCGCGC-CUGGGGC------CGGCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 3992 0.72 0.176378
Target:  5'- aCGCCAGCGCGGccaaguuaacaguccGCCCCccgagcagcauaCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCGCC---------------UGGGGcc----------GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 4163 0.67 0.353853
Target:  5'- -aCCAGCgaGCGGGCCUUguuuugGGCCGCGCg- -3'
miRNA:   3'- gcGGUCG--CGCCUGGGG------CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 4219 0.68 0.325191
Target:  5'- uCGCCGGCcuCGG-UCCUGGCCccgaggGCACCGc -3'
miRNA:   3'- -GCGGUCGc-GCCuGGGGCCGG------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 4221 0.74 0.125865
Target:  5'- aGCCcuGCGCGGugC-CGGCgCGCGCCGg -3'
miRNA:   3'- gCGGu-CGCGCCugGgGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 4257 0.67 0.387388
Target:  5'- gCGCCAGCagccagucggcuuugGCGG-CCacgaGGCgCGCGCCGg -3'
miRNA:   3'- -GCGGUCG---------------CGCCuGGgg--CCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 4331 0.74 0.116942
Target:  5'- cCGCUucGGcCGCGGccgccuccGCCCCGGCCGCgGCCGc -3'
miRNA:   3'- -GCGG--UC-GCGCC--------UGGGGCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 4382 0.67 0.376493
Target:  5'- cCGCgAGCGCGcGcGCCgCGGCCcagGCGCUg -3'
miRNA:   3'- -GCGgUCGCGC-C-UGGgGCCGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 4621 0.7 0.255426
Target:  5'- aGCuCGGCGCGGGcggcCCgCCGGCgcucgCGCGCCu -3'
miRNA:   3'- gCG-GUCGCGCCU----GG-GGCCG-----GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 4882 0.69 0.261226
Target:  5'- gGgCAGCGgcaGGGcCCCCGcGCCGCugCGa -3'
miRNA:   3'- gCgGUCGCg--CCU-GGGGC-CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 5356 0.67 0.353115
Target:  5'- uCGCgCGGCGCGGccgggcccagGCUCCGGCgGUccgagcgGCCGg -3'
miRNA:   3'- -GCG-GUCGCGCC----------UGGGGCCGgCG-------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 5767 0.72 0.16383
Target:  5'- gCGCCAacgcgaaGCGCGGcgucuaGCCCCgGGCCcgGCACCGc -3'
miRNA:   3'- -GCGGU-------CGCGCC------UGGGG-CCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 6287 0.65 0.447428
Target:  5'- gCGCaGGCaGCGGACCUCGGCgaggucggccucgaUGCGCg- -3'
miRNA:   3'- -GCGgUCG-CGCCUGGGGCCG--------------GCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 6329 0.72 0.176378
Target:  5'- gGCCAcguaCGCGGguGCCCCGGCgGCaACCGc -3'
miRNA:   3'- gCGGUc---GCGCC--UGGGGCCGgCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 6766 0.68 0.325191
Target:  5'- gGCCGGUGCGaGGCgCCaGCUGCuCCGu -3'
miRNA:   3'- gCGGUCGCGC-CUGgGGcCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 6953 0.7 0.222822
Target:  5'- gGCCAgGCGCGGGgUCgCGGCgGCGCUu -3'
miRNA:   3'- gCGGU-CGCGCCUgGG-GCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 7301 0.68 0.3183
Target:  5'- cCGCUGGCGCGGcGCCUgagCGGaCCGaCGCUAu -3'
miRNA:   3'- -GCGGUCGCGCC-UGGG---GCC-GGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 7445 0.66 0.421289
Target:  5'- uCGCUAGCGCGGACCUacuacaucugccagCGgaacaucgaguGCCucucaaaGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGG--------------GC-----------CGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 7783 0.68 0.29829
Target:  5'- uGCCgaGGCuCGGGCCCCGccgccccuGCCGCGgCAg -3'
miRNA:   3'- gCGG--UCGcGCCUGGGGC--------CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 7832 0.67 0.384254
Target:  5'- gCGCCGGuCGCcgugucuccGGcACCgCCGGUgGCGCCu -3'
miRNA:   3'- -GCGGUC-GCG---------CC-UGG-GGCCGgCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.