miRNA display CGI


Results 61 - 80 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 12062 0.66 0.72034
Target:  5'- cGCUGcggacgccGAGGCCGcgGagcgccgcgggucCGGCGCCCgCg -3'
miRNA:   3'- -CGACua------CUCCGGCuaC-------------GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 39577 0.67 0.715435
Target:  5'- uUUGGUG-GGCCaGGuggccccagcgcugcUGCGGCGCggCCCCa -3'
miRNA:   3'- cGACUACuCCGG-CU---------------ACGUCGCG--GGGG- -5'
6684 3' -59.2 NC_001847.1 + 113584 0.67 0.715435
Target:  5'- aGCgGAUGAGGCucacgcacacgCGAUGUgccagcuugGGCgcguuggcccgcgcgGCCCCCg -3'
miRNA:   3'- -CGaCUACUCCG-----------GCUACG---------UCG---------------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 10355 0.67 0.711499
Target:  5'- gGCggcGAgGGGGCCGccGCcGaaaGCCCCCc -3'
miRNA:   3'- -CGa--CUaCUCCGGCuaCGuCg--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66978 0.67 0.711499
Target:  5'- cGCUGcaGAGGCgGGcUGCGGCGCggCgCCg -3'
miRNA:   3'- -CGACuaCUCCGgCU-ACGUCGCG--GgGG- -5'
6684 3' -59.2 NC_001847.1 + 28503 0.67 0.711499
Target:  5'- uCUGgcGAGGCgUGGcccgGCAGCGCgCCgCCg -3'
miRNA:   3'- cGACuaCUCCG-GCUa---CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 115271 0.67 0.711499
Target:  5'- gGUUGGcgGuGGCgGGcuaaGcCGGCGCCCCCg -3'
miRNA:   3'- -CGACUa-CuCCGgCUa---C-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 131316 0.67 0.711499
Target:  5'- uCUGgcGAGGCgUGGcccgGCAGCGCgCCgCCg -3'
miRNA:   3'- cGACuaCUCCG-GCUa---CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 80865 0.67 0.711499
Target:  5'- cGCguc-GAGGCCGuccgGCAGCacGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCua--CGUCG--CGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 113168 0.67 0.711499
Target:  5'- gGCggcGAgGGGGCCGccGCcGaaaGCCCCCc -3'
miRNA:   3'- -CGa--CUaCUCCGGCuaCGuCg--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 123400 0.67 0.711499
Target:  5'- aGCUGGuUGAGGCgGucccccaGCAGCGCgUCa -3'
miRNA:   3'- -CGACU-ACUCCGgCua-----CGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 32141 0.67 0.701613
Target:  5'- --gGcgGGGGCgGggGCGGgGgCCCCg -3'
miRNA:   3'- cgaCuaCUCCGgCuaCGUCgCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66244 0.67 0.701613
Target:  5'- gGCUGcacucuccGGGCCGAgcaugcucGCGGCGaCUCCCg -3'
miRNA:   3'- -CGACuac-----UCCGGCUa-------CGUCGC-GGGGG- -5'
6684 3' -59.2 NC_001847.1 + 32026 0.67 0.701613
Target:  5'- aGCUccGgcGGGGCgCGggGaCGGCGCCCgCg -3'
miRNA:   3'- -CGA--CuaCUCCG-GCuaC-GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 134839 0.67 0.701613
Target:  5'- aGCUccGgcGGGGCgCGggGaCGGCGCCCgCg -3'
miRNA:   3'- -CGA--CuaCUCCG-GCuaC-GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 134954 0.67 0.701613
Target:  5'- --gGcgGGGGCgGggGCGGgGgCCCCg -3'
miRNA:   3'- cgaCuaCUCCGgCuaCGUCgCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 45532 0.67 0.701613
Target:  5'- cGCgGAcGGGGCCGugccgcGCAGCGCgUUCa -3'
miRNA:   3'- -CGaCUaCUCCGGCua----CGUCGCGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 76896 0.67 0.691671
Target:  5'- cCUGAcgGAGGgCGGUcGC-GCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCgGCUA-CGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 74135 0.67 0.691671
Target:  5'- uGCUGcgcGUGGcGCCGGggcgaaugaugGCGGCGCCUCUc -3'
miRNA:   3'- -CGAC---UACUcCGGCUa----------CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 91674 0.67 0.691671
Target:  5'- gGCUGcgGcugcGGCUGcgGCuGCGgCUCCCg -3'
miRNA:   3'- -CGACuaCu---CCGGCuaCGuCGC-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.