miRNA display CGI


Results 41 - 60 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 28315 0.66 0.740726
Target:  5'- cGCgaGAggcGGGcGCCGGgccCGGCGCCCCg -3'
miRNA:   3'- -CGa-CUa--CUC-CGGCUac-GUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 116263 0.66 0.740726
Target:  5'- cGCUGcgGAcucuGGCgccgcucggCGAgGCAGCGUgCCCCg -3'
miRNA:   3'- -CGACuaCU----CCG---------GCUaCGUCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 20868 0.66 0.731064
Target:  5'- cGCUGcgGcGGCgcucuuuauacUGG-GCGGaCGCCCCCg -3'
miRNA:   3'- -CGACuaCuCCG-----------GCUaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 29005 0.66 0.731064
Target:  5'- -----gGAGGCCGGcgccggcggcaGCGGCGCCCgCg -3'
miRNA:   3'- cgacuaCUCCGGCUa----------CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 50310 0.66 0.731064
Target:  5'- aGCUGcggGGGGuuGugcgcacGCAG-GCCCCCc -3'
miRNA:   3'- -CGACua-CUCCggCua-----CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74264 0.66 0.731064
Target:  5'- cGCUGcUGGGGCCcgcGCGcGCGCUCgCg -3'
miRNA:   3'- -CGACuACUCCGGcuaCGU-CGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 90329 0.66 0.731064
Target:  5'- uGCcGAcUGGGGCgCGGUGCcGCGCUCg- -3'
miRNA:   3'- -CGaCU-ACUCCG-GCUACGuCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 79002 0.66 0.731064
Target:  5'- uGCUGAgccaccccgGAGGCUGc-GCGGCGUgCaCCg -3'
miRNA:   3'- -CGACUa--------CUCCGGCuaCGUCGCGgG-GG- -5'
6684 3' -59.2 NC_001847.1 + 131818 0.66 0.731064
Target:  5'- -----gGAGGCCGGcgccggcggcaGCGGCGCCCgCg -3'
miRNA:   3'- cgacuaCUCCGGCUa----------CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 95540 0.66 0.731064
Target:  5'- cCUGGggcUGGGGCCGcgccgcaGCAGCGCUggggccaccuggCCCa -3'
miRNA:   3'- cGACU---ACUCCGGCua-----CGUCGCGG------------GGG- -5'
6684 3' -59.2 NC_001847.1 + 16056 0.66 0.731064
Target:  5'- --cGcgGcGGCCGcgGCgccucugcugGGCGCCUCCa -3'
miRNA:   3'- cgaCuaCuCCGGCuaCG----------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 26369 0.66 0.731064
Target:  5'- --gGGUG-GGCCGcccgGCAGCGUCCg- -3'
miRNA:   3'- cgaCUACuCCGGCua--CGUCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 86300 0.66 0.729122
Target:  5'- cGCgccgcgcGGCCGA---GGCGCCCCCg -3'
miRNA:   3'- -CGacuacu-CCGGCUacgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 115742 0.66 0.721319
Target:  5'- cGCUGGUGgccauGGGCacacacaccgcuUGAUgGCGGCGgCCCUg -3'
miRNA:   3'- -CGACUAC-----UCCG------------GCUA-CGUCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 23748 0.66 0.721319
Target:  5'- cCUGgcGGGGCCuGAuuUGCcuGUGCCCUCc -3'
miRNA:   3'- cGACuaCUCCGG-CU--ACGu-CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 11403 0.66 0.721319
Target:  5'- -----aGAGGCC-AUGUuGCgGCCCCCg -3'
miRNA:   3'- cgacuaCUCCGGcUACGuCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 100643 0.66 0.721319
Target:  5'- gGCUGcgGcgccaGGGCCGcgcugcUGCGGCgggggGUCCCCa -3'
miRNA:   3'- -CGACuaC-----UCCGGCu-----ACGUCG-----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 49904 0.66 0.721319
Target:  5'- uGCUGGgcccGGCCGcgGUGGCGCUgCg -3'
miRNA:   3'- -CGACUacu-CCGGCuaCGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 126561 0.66 0.721319
Target:  5'- cCUGgcGGGGCCuGAuuUGCcuGUGCCCUCc -3'
miRNA:   3'- cGACuaCUCCGG-CU--ACGu-CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 15539 0.66 0.721319
Target:  5'- gGCUGcUGGcGCCGGUGCGcGCGCggCCg -3'
miRNA:   3'- -CGACuACUcCGGCUACGU-CGCGggGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.