miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 23969 0.66 0.759763
Target:  5'- cGUUGGUGguugccauGGGCCGGcuUGGCGCCaguCCCa -3'
miRNA:   3'- -CGACUAC--------UCCGGCUacGUCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 130159 0.66 0.758821
Target:  5'- uUUGccGcGGCCGccGCAGCcccagcuGCCCCCc -3'
miRNA:   3'- cGACuaCuCCGGCuaCGUCG-------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 27346 0.66 0.758821
Target:  5'- uUUGccGcGGCCGccGCAGCcccagcuGCCCCCc -3'
miRNA:   3'- cGACuaCuCCGGCuaCGUCG-------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 75617 0.66 0.758821
Target:  5'- cCUGccAUGAGcgcagcgcaccaaGCCGGUGCggccucGGCGCaCCCCc -3'
miRNA:   3'- cGAC--UACUC-------------CGGCUACG------UCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 23189 0.66 0.750295
Target:  5'- gGCUGggGuGGGCUGGgcuaaccuUGCGGCagGUCCCUa -3'
miRNA:   3'- -CGACuaC-UCCGGCU--------ACGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 81015 0.66 0.750295
Target:  5'- cGCggccacuUGcaGCCGGUGCuGCGCCuCCCg -3'
miRNA:   3'- -CGacu----ACucCGGCUACGuCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 90187 0.66 0.750295
Target:  5'- -----cGGGGCUGcUGCGGCGCgCCg -3'
miRNA:   3'- cgacuaCUCCGGCuACGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 100746 0.66 0.750295
Target:  5'- aGCUcucGGGGCCGggGUccaGGuCGCCCCg -3'
miRNA:   3'- -CGAcuaCUCCGGCuaCG---UC-GCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 38328 0.66 0.750295
Target:  5'- cGC-GcgGucGCCGccGCugcGCGCCCCCc -3'
miRNA:   3'- -CGaCuaCucCGGCuaCGu--CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 126002 0.66 0.750295
Target:  5'- gGCUGggGuGGGCUGGgcuaaccuUGCGGCagGUCCCUa -3'
miRNA:   3'- -CGACuaC-UCCGGCU--------ACGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134709 0.66 0.750295
Target:  5'- cGCUGcUGccGCCGccGC--CGCCCCCg -3'
miRNA:   3'- -CGACuACucCGGCuaCGucGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 82110 0.66 0.750295
Target:  5'- gGCUcgGAgccGAGGcCCGAgcgcGCAGCGgCCgCCg -3'
miRNA:   3'- -CGA--CUa--CUCC-GGCUa---CGUCGCgGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 102969 0.66 0.750295
Target:  5'- gGCcGG-GGGGCCGGgguucUGCgucuuggcccccGGgGCCCCCg -3'
miRNA:   3'- -CGaCUaCUCCGGCU-----ACG------------UCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 156 0.66 0.750295
Target:  5'- gGCcGG-GGGGCCGGgguucUGCgucuuggcccccGGgGCCCCCg -3'
miRNA:   3'- -CGaCUaCUCCGGCU-----ACG------------UCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 12558 0.66 0.749343
Target:  5'- cGCaGGUGcgcaacgGGcGCCGcguacGCGGCGCCCUCg -3'
miRNA:   3'- -CGaCUAC-------UC-CGGCua---CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 117050 0.66 0.740726
Target:  5'- cGCcGAgGAGGCgGAaGCcuCGCCCUCg -3'
miRNA:   3'- -CGaCUaCUCCGgCUaCGucGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 105768 0.66 0.740726
Target:  5'- aGC-GcgGcGGCCGccucggcgGCAGCGCCgCCg -3'
miRNA:   3'- -CGaCuaCuCCGGCua------CGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 131128 0.66 0.740726
Target:  5'- cGCgaGAggcGGGcGCCGGgccCGGCGCCCCg -3'
miRNA:   3'- -CGa-CUa--CUC-CGGCUac-GUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 116263 0.66 0.740726
Target:  5'- cGCUGcgGAcucuGGCgccgcucggCGAgGCAGCGUgCCCCg -3'
miRNA:   3'- -CGACuaCU----CCG---------GCUaCGUCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 73411 0.66 0.740726
Target:  5'- cGUUGcagGAucGGCUGAuUGCcgAGCGCCCUCu -3'
miRNA:   3'- -CGACua-CU--CCGGCU-ACG--UCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.