miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 15393 0.69 0.590942
Target:  5'- gGCgucgGGgcUGGGGCCGGguuucgGCucgcccucGGCGCCUCCg -3'
miRNA:   3'- -CGa---CU--ACUCCGGCUa-----CG--------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 15539 0.66 0.721319
Target:  5'- gGCUGcUGGcGCCGGUGCGcGCGCggCCg -3'
miRNA:   3'- -CGACuACUcCGGCUACGU-CGCGggGG- -5'
6684 3' -59.2 NC_001847.1 + 16056 0.66 0.731064
Target:  5'- --cGcgGcGGCCGcgGCgccucugcugGGCGCCUCCa -3'
miRNA:   3'- cgaCuaCuCCGGCuaCG----------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 17561 0.71 0.437804
Target:  5'- cGCaGAcGuuuuGGCCGG-GCAGCGCgCCCCc -3'
miRNA:   3'- -CGaCUaCu---CCGGCUaCGUCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 18511 0.69 0.590942
Target:  5'- gGCUGccGAGGCCagcgcUGCGggcGCGCCgCCg -3'
miRNA:   3'- -CGACuaCUCCGGcu---ACGU---CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 18681 0.66 0.769121
Target:  5'- cGCUGAgcaGAaccGcGCCGcgcGUGCgccAGCGCCCaCCg -3'
miRNA:   3'- -CGACUa--CU---C-CGGC---UACG---UCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 20868 0.66 0.731064
Target:  5'- cGCUGcgGcGGCgcucuuuauacUGG-GCGGaCGCCCCCg -3'
miRNA:   3'- -CGACuaCuCCG-----------GCUaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 21579 0.68 0.601003
Target:  5'- gGCggGAgagGGGGCCGcgggGCccCGCCCCCc -3'
miRNA:   3'- -CGa-CUa--CUCCGGCua--CGucGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 21867 0.67 0.681679
Target:  5'- uGgUGcgGGGGCUGcgGC-GCGCUgCCg -3'
miRNA:   3'- -CgACuaCUCCGGCuaCGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 21960 0.68 0.611087
Target:  5'- gGCaccgGggGGGGCUuucgGCGGCgGCCCCCu -3'
miRNA:   3'- -CGa---CuaCUCCGGcua-CGUCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 22184 0.68 0.651501
Target:  5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3'
miRNA:   3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 22272 0.72 0.378198
Target:  5'- ---cGUGAGcGCCGuagGCAGCGCCgCCg -3'
miRNA:   3'- cgacUACUC-CGGCua-CGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 22803 0.73 0.362198
Target:  5'- aGCUcguaGAUGcGGGCCGGcgGCGGcCGCuCCCCg -3'
miRNA:   3'- -CGA----CUAC-UCCGGCUa-CGUC-GCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 23189 0.66 0.750295
Target:  5'- gGCUGggGuGGGCUGGgcuaaccuUGCGGCagGUCCCUa -3'
miRNA:   3'- -CGACuaC-UCCGGCU--------ACGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 23748 0.66 0.721319
Target:  5'- cCUGgcGGGGCCuGAuuUGCcuGUGCCCUCc -3'
miRNA:   3'- cGACuaCUCCGG-CU--ACGu-CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 23969 0.66 0.759763
Target:  5'- cGUUGGUGguugccauGGGCCGGcuUGGCGCCaguCCCa -3'
miRNA:   3'- -CGACUAC--------UCCGGCUacGUCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 24351 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 24891 0.7 0.502445
Target:  5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3'
miRNA:   3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 24994 0.68 0.607051
Target:  5'- uGUUGAUGGccauGGCCaucGAguccagcagcuuCAGCGCCCCCa -3'
miRNA:   3'- -CGACUACU----CCGG---CUac----------GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 26291 0.67 0.681679
Target:  5'- cGCUGcggcaaGUGAcucgcGGCgagucgUGggGCAGCGUCCCCa -3'
miRNA:   3'- -CGAC------UACU-----CCG------GCuaCGUCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.