miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 156 0.66 0.750295
Target:  5'- gGCcGG-GGGGCCGGgguucUGCgucuuggcccccGGgGCCCCCg -3'
miRNA:   3'- -CGaCUaCUCCGGCU-----ACG------------UCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 1129 0.67 0.681679
Target:  5'- cGCUGGcgagaccgcccgUGAcuguacuGCCGAUGCcgcgcGCGCUCCCa -3'
miRNA:   3'- -CGACU------------ACUc------CGGCUACGu----CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 2459 0.69 0.560961
Target:  5'- aGCUcccGAUcGA-GCgGGcgGCGGCGCCCCCg -3'
miRNA:   3'- -CGA---CUA-CUcCGgCUa-CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 2759 0.69 0.590942
Target:  5'- cGCgGcgGc-GCCGgcGcCGGCGCCCCCg -3'
miRNA:   3'- -CGaCuaCucCGGCuaC-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 3980 0.69 0.551055
Target:  5'- gGCgccgGGGGCCGG-GCGcGCGgCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCUaCGU-CGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 4006 0.66 0.759763
Target:  5'- --cGcgGGGcGCCGGgccCGGCGCCCgCCu -3'
miRNA:   3'- cgaCuaCUC-CGGCUac-GUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 4320 0.66 0.759763
Target:  5'- gGCU-AUGAcGGCCGcuucggccGCGGcCGCCUCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua------CGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 4870 0.68 0.601003
Target:  5'- --gGggGGGGCggCGGgcagcgGCAGgGCCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--GCUa-----CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 6758 0.69 0.551055
Target:  5'- uGC-GGUGcGGCCGGUGCgaGGCGCCagcugcUCCg -3'
miRNA:   3'- -CGaCUACuCCGGCUACG--UCGCGG------GGG- -5'
6684 3' -59.2 NC_001847.1 + 6962 0.71 0.446752
Target:  5'- -----cGGGGUCGcgGCGGCGCUUCCg -3'
miRNA:   3'- cgacuaCUCCGGCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 8486 0.66 0.769121
Target:  5'- cGCUc----GGCCGGggGCGGgGCCCCUu -3'
miRNA:   3'- -CGAcuacuCCGGCUa-CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 10355 0.67 0.711499
Target:  5'- gGCggcGAgGGGGCCGccGCcGaaaGCCCCCc -3'
miRNA:   3'- -CGa--CUaCUCCGGCuaCGuCg--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 11207 0.7 0.492942
Target:  5'- gGCUGGUcGAGGuuGAaGUGGgGCCUCUg -3'
miRNA:   3'- -CGACUA-CUCCggCUaCGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 11391 0.67 0.691671
Target:  5'- ------aGGGCCGcugcuaucAUGCAGCGCCgCCg -3'
miRNA:   3'- cgacuacUCCGGC--------UACGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 11403 0.66 0.721319
Target:  5'- -----aGAGGCC-AUGUuGCgGCCCCCg -3'
miRNA:   3'- cgacuaCUCCGGcUACGuCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 12062 0.66 0.72034
Target:  5'- cGCUGcggacgccGAGGCCGcgGagcgccgcgggucCGGCGCCCgCg -3'
miRNA:   3'- -CGACua------CUCCGGCuaC-------------GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 12558 0.66 0.749343
Target:  5'- cGCaGGUGcgcaacgGGcGCCGcguacGCGGCGCCCUCg -3'
miRNA:   3'- -CGaCUAC-------UC-CGGCua---CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 13259 0.68 0.621186
Target:  5'- aGCUGcgcGUGAuGCUGAcUGCGGUGCCggCCCu -3'
miRNA:   3'- -CGAC---UACUcCGGCU-ACGUCGCGG--GGG- -5'
6684 3' -59.2 NC_001847.1 + 13862 0.68 0.631293
Target:  5'- cGCUGAUGGuGGCgaGggGgGGCGCCUUUg -3'
miRNA:   3'- -CGACUACU-CCGg-CuaCgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 14326 0.77 0.197584
Target:  5'- uGCUcgcGGUGGGGCCGGgcguggugGCGGCGCCUgCg -3'
miRNA:   3'- -CGA---CUACUCCGGCUa-------CGUCGCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.