miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 74264 0.66 0.731064
Target:  5'- cGCUGcUGGGGCCcgcGCGcGCGCUCgCg -3'
miRNA:   3'- -CGACuACUCCGGcuaCGU-CGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 16056 0.66 0.731064
Target:  5'- --cGcgGcGGCCGcgGCgccucugcugGGCGCCUCCa -3'
miRNA:   3'- cgaCuaCuCCGGCuaCG----------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 38328 0.66 0.750295
Target:  5'- cGC-GcgGucGCCGccGCugcGCGCCCCCc -3'
miRNA:   3'- -CGaCuaCucCGGCuaCGu--CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90187 0.66 0.750295
Target:  5'- -----cGGGGCUGcUGCGGCGCgCCg -3'
miRNA:   3'- cgacuaCUCCGGCuACGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 79002 0.66 0.731064
Target:  5'- uGCUGAgccaccccgGAGGCUGc-GCGGCGUgCaCCg -3'
miRNA:   3'- -CGACUa--------CUCCGGCuaCGUCGCGgG-GG- -5'
6684 3' -59.2 NC_001847.1 + 15539 0.66 0.721319
Target:  5'- gGCUGcUGGcGCCGGUGCGcGCGCggCCg -3'
miRNA:   3'- -CGACuACUcCGGCUACGU-CGCGggGG- -5'
6684 3' -59.2 NC_001847.1 + 90329 0.66 0.731064
Target:  5'- uGCcGAcUGGGGCgCGGUGCcGCGCUCg- -3'
miRNA:   3'- -CGaCU-ACUCCG-GCUACGuCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 11403 0.66 0.721319
Target:  5'- -----aGAGGCC-AUGUuGCgGCCCCCg -3'
miRNA:   3'- cgacuaCUCCGGcUACGuCG-CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 20868 0.66 0.731064
Target:  5'- cGCUGcgGcGGCgcucuuuauacUGG-GCGGaCGCCCCCg -3'
miRNA:   3'- -CGACuaCuCCG-----------GCUaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 102969 0.66 0.750295
Target:  5'- gGCcGG-GGGGCCGGgguucUGCgucuuggcccccGGgGCCCCCg -3'
miRNA:   3'- -CGaCUaCUCCGGCU-----ACG------------UCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 126561 0.66 0.721319
Target:  5'- cCUGgcGGGGCCuGAuuUGCcuGUGCCCUCc -3'
miRNA:   3'- cGACuaCUCCGG-CU--ACGu-CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 105768 0.66 0.740726
Target:  5'- aGC-GcgGcGGCCGccucggcgGCAGCGCCgCCg -3'
miRNA:   3'- -CGaCuaCuCCGGCua------CGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 49904 0.66 0.721319
Target:  5'- uGCUGGgcccGGCCGcgGUGGCGCUgCg -3'
miRNA:   3'- -CGACUacu-CCGGCuaCGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 131128 0.66 0.740726
Target:  5'- cGCgaGAggcGGGcGCCGGgccCGGCGCCCCg -3'
miRNA:   3'- -CGa-CUa--CUC-CGGCUac-GUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 100643 0.66 0.721319
Target:  5'- gGCUGcgGcgccaGGGCCGcgcugcUGCGGCgggggGUCCCCa -3'
miRNA:   3'- -CGACuaC-----UCCGGCu-----ACGUCG-----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 100746 0.66 0.750295
Target:  5'- aGCUcucGGGGCCGggGUccaGGuCGCCCCg -3'
miRNA:   3'- -CGAcuaCUCCGGCuaCG---UC-GCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 131818 0.66 0.731064
Target:  5'- -----gGAGGCCGGcgccggcggcaGCGGCGCCCgCg -3'
miRNA:   3'- cgacuaCUCCGGCUa----------CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 126002 0.66 0.750295
Target:  5'- gGCUGggGuGGGCUGGgcuaaccuUGCGGCagGUCCCUa -3'
miRNA:   3'- -CGACuaC-UCCGGCU--------ACGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 26369 0.66 0.731064
Target:  5'- --gGGUG-GGCCGcccgGCAGCGUCCg- -3'
miRNA:   3'- cgaCUACuCCGGCua--CGUCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 12062 0.66 0.72034
Target:  5'- cGCUGcggacgccGAGGCCGcgGagcgccgcgggucCGGCGCCCgCg -3'
miRNA:   3'- -CGACua------CUCCGGCuaC-------------GUCGCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.