miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 123466 1.13 0.00065
Target:  5'- cGCUGAUGAGGCCGAUGCAGCGCCCCCu -3'
miRNA:   3'- -CGACUACUCCGGCUACGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134026 0.89 0.029982
Target:  5'- cGCUGGUgcugGAGGCCGcgGCGGCGCCgCCCg -3'
miRNA:   3'- -CGACUA----CUCCGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 31213 0.89 0.029982
Target:  5'- cGCUGGUgcugGAGGCCGcgGCGGCGCCgCCCg -3'
miRNA:   3'- -CGACUA----CUCCGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 34371 0.78 0.188083
Target:  5'- cGCUGAUGcGGCCGAaacaacgGCGGCcGCCgCCg -3'
miRNA:   3'- -CGACUACuCCGGCUa------CGUCG-CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 14326 0.77 0.197584
Target:  5'- uGCUcgcGGUGGGGCCGGgcguggugGCGGCGCCUgCg -3'
miRNA:   3'- -CGA---CUACUCCGGCUa-------CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 86498 0.77 0.20249
Target:  5'- gGCUGcgGGGGCg---GCGGCGCCCCg -3'
miRNA:   3'- -CGACuaCUCCGgcuaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 130862 0.76 0.251543
Target:  5'- -----cGAGGCgGggGCGGCGCCCCUc -3'
miRNA:   3'- cgacuaCUCCGgCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 28049 0.76 0.251543
Target:  5'- -----cGAGGCgGggGCGGCGCCCCUc -3'
miRNA:   3'- cgacuaCUCCGgCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 130789 0.75 0.257561
Target:  5'- uGCUGAcguaaucGAGGCCGA-GCuGGCGCCCUa -3'
miRNA:   3'- -CGACUa------CUCCGGCUaCG-UCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 28079 0.74 0.30998
Target:  5'- aGCgggGAcUGAGGCgGGgggcgGCGGUGCCCUCg -3'
miRNA:   3'- -CGa--CU-ACUCCGgCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 98774 0.74 0.30998
Target:  5'- cGCUGcccGGGCCGcgGCGGCGCCgCg -3'
miRNA:   3'- -CGACuacUCCGGCuaCGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 130892 0.74 0.30998
Target:  5'- aGCgggGAcUGAGGCgGGgggcgGCGGUGCCCUCg -3'
miRNA:   3'- -CGa--CU-ACUCCGgCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 55572 0.74 0.317075
Target:  5'- --cGAaGAGGCCGcgaGCccGGCGCCCCCc -3'
miRNA:   3'- cgaCUaCUCCGGCua-CG--UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 120694 0.74 0.324293
Target:  5'- -----aGAGGCCGcgGCcGCGCaCCCCg -3'
miRNA:   3'- cgacuaCUCCGGCuaCGuCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 86041 0.73 0.336841
Target:  5'- cGCUGGUugggcgaggcgcugGGGGCCacgGAUGCgAGCGUCCUCg -3'
miRNA:   3'- -CGACUA--------------CUCCGG---CUACG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 93133 0.73 0.339092
Target:  5'- aGCUGGccGGGCUGc--CGGCGCCCCCc -3'
miRNA:   3'- -CGACUacUCCGGCuacGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 107990 0.73 0.339092
Target:  5'- gGCUGGcc--GCCGcgGCuGCGCCCCCc -3'
miRNA:   3'- -CGACUacucCGGCuaCGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 43597 0.73 0.346674
Target:  5'- aGCgUGGcgcUGGGGCCGGUGCuGGCcacgGCCCUCa -3'
miRNA:   3'- -CG-ACU---ACUCCGGCUACG-UCG----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66907 0.73 0.35749
Target:  5'- cGCUGAUGcaAGcgugcuugcggccccGCCGcgGCccguGCGCCCCCu -3'
miRNA:   3'- -CGACUAC--UC---------------CGGCuaCGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127061 0.73 0.362198
Target:  5'- cGCcGAUcucGCCGcgGCGGUGCCCCCc -3'
miRNA:   3'- -CGaCUAcucCGGCuaCGUCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.