miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 22803 0.73 0.362198
Target:  5'- aGCUcguaGAUGcGGGCCGGcgGCGGcCGCuCCCCg -3'
miRNA:   3'- -CGA----CUAC-UCCGGCUa-CGUC-GCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 48191 0.73 0.36536
Target:  5'- uGCUG-UGccgcgccggcggccaGGGCCGAggagcGCAGCGCCgCCa -3'
miRNA:   3'- -CGACuAC---------------UCCGGCUa----CGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 22272 0.72 0.378198
Target:  5'- ---cGUGAGcGCCGuagGCAGCGCCgCCg -3'
miRNA:   3'- cgacUACUC-CGGCua-CGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 47405 0.72 0.386375
Target:  5'- gGCUccGUGAGGCCGuggGCGGCGUCUgCg -3'
miRNA:   3'- -CGAc-UACUCCGGCua-CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 52591 0.72 0.394667
Target:  5'- gGCgGccGAGGCCGAgcccgcggGCGGCGCCUUUg -3'
miRNA:   3'- -CGaCuaCUCCGGCUa-------CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 95708 0.72 0.403073
Target:  5'- cGCUGAUG-GGCUac-GCccacGCGCCCCCc -3'
miRNA:   3'- -CGACUACuCCGGcuaCGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 101379 0.72 0.411592
Target:  5'- cGCcGcgGGGGCUGcccGCGGCGCCgCCg -3'
miRNA:   3'- -CGaCuaCUCCGGCua-CGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 133166 0.72 0.420222
Target:  5'- cGCUGcccgggGAGGCgcugGCGGCGCCgCCCg -3'
miRNA:   3'- -CGACua----CUCCGgcuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 30353 0.72 0.420222
Target:  5'- cGCUGcccgggGAGGCgcugGCGGCGCCgCCCg -3'
miRNA:   3'- -CGACua----CUCCGgcuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 116136 0.72 0.420222
Target:  5'- cGC-GAaGAGGCCGAg--GGCGCCgCCCg -3'
miRNA:   3'- -CGaCUaCUCCGGCUacgUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 118452 0.72 0.420222
Target:  5'- uGCUGGUGGcGGCCucgugccUGCGGCGCaaggCCCg -3'
miRNA:   3'- -CGACUACU-CCGGcu-----ACGUCGCGg---GGG- -5'
6684 3' -59.2 NC_001847.1 + 90869 0.72 0.423704
Target:  5'- gGCUGGUgucGAGGCCGggGCcguugcccagucgccGGCGCgcucagCCCCa -3'
miRNA:   3'- -CGACUA---CUCCGGCuaCG---------------UCGCG------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 80730 0.71 0.42896
Target:  5'- gGCcGccGAGGCCaaccGcgGCGGCGCCCgCCu -3'
miRNA:   3'- -CGaCuaCUCCGG----CuaCGUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 17561 0.71 0.437804
Target:  5'- cGCaGAcGuuuuGGCCGG-GCAGCGCgCCCCc -3'
miRNA:   3'- -CGaCUaCu---CCGGCUaCGUCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 51382 0.71 0.437804
Target:  5'- cGCUcGcgGAGGCCGcggucGCGGCGCCgaaCCu -3'
miRNA:   3'- -CGA-CuaCUCCGGCua---CGUCGCGGg--GG- -5'
6684 3' -59.2 NC_001847.1 + 34642 0.71 0.446752
Target:  5'- cGCgcc-GAGGCCGA-GCGGCGCgCCg -3'
miRNA:   3'- -CGacuaCUCCGGCUaCGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 6962 0.71 0.446752
Target:  5'- -----cGGGGUCGcgGCGGCGCUUCCg -3'
miRNA:   3'- cgacuaCUCCGGCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 57272 0.71 0.447653
Target:  5'- cGCUGuucaaaaacucccGGGCCGAg--AGCGCCCCCa -3'
miRNA:   3'- -CGACuac----------UCCGGCUacgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 81858 0.71 0.447653
Target:  5'- aGCggcGUGAGGCgGAcgcgcgccugggcgcGCAGCGCCCCg -3'
miRNA:   3'- -CGac-UACUCCGgCUa--------------CGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 80529 0.71 0.464948
Target:  5'- cGCUGAaaguagcGGGCgGAuUGCucgcccacGGCGCCCCCg -3'
miRNA:   3'- -CGACUac-----UCCGgCU-ACG--------UCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.