miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 135025 0.7 0.483522
Target:  5'- cGCgGgcGGGGCCGggGCgcggGGCGCCggaCCCa -3'
miRNA:   3'- -CGaCuaCUCCGGCuaCG----UCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 134954 0.67 0.701613
Target:  5'- --gGcgGGGGCgGggGCGGgGgCCCCg -3'
miRNA:   3'- cgaCuaCUCCGgCuaCGUCgCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134839 0.67 0.701613
Target:  5'- aGCUccGgcGGGGCgCGggGaCGGCGCCCgCg -3'
miRNA:   3'- -CGA--CuaCUCCG-GCuaC-GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 134709 0.66 0.750295
Target:  5'- cGCUGcUGccGCCGccGC--CGCCCCCg -3'
miRNA:   3'- -CGACuACucCGGCuaCGucGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134240 0.68 0.631293
Target:  5'- gGCggGcgGcGGCCGGcggccGCGGCGgCCCCg -3'
miRNA:   3'- -CGa-CuaCuCCGGCUa----CGUCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134190 0.67 0.661586
Target:  5'- -----cGGGuGCCGgcGCAGuCGUCCCCg -3'
miRNA:   3'- cgacuaCUC-CGGCuaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134026 0.89 0.029982
Target:  5'- cGCUGGUgcugGAGGCCGcgGCGGCGCCgCCCg -3'
miRNA:   3'- -CGACUA----CUCCGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 133166 0.72 0.420222
Target:  5'- cGCUGcccgggGAGGCgcugGCGGCGCCgCCCg -3'
miRNA:   3'- -CGACua----CUCCGgcuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 132835 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132210 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 131818 0.66 0.731064
Target:  5'- -----gGAGGCCGGcgccggcggcaGCGGCGCCCgCg -3'
miRNA:   3'- cgacuaCUCCGGCUa----------CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 131316 0.67 0.711499
Target:  5'- uCUGgcGAGGCgUGGcccgGCAGCGCgCCgCCg -3'
miRNA:   3'- cGACuaCUCCG-GCUa---CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 131128 0.66 0.740726
Target:  5'- cGCgaGAggcGGGcGCCGGgccCGGCGCCCCg -3'
miRNA:   3'- -CGa-CUa--CUC-CGGCUac-GUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 131066 0.71 0.472333
Target:  5'- cGCUGAggccgaggccgaggcUGAGGCCGGgacugggGCcgggaccagaaccaaAGCGgCCCCg -3'
miRNA:   3'- -CGACU---------------ACUCCGGCUa------CG---------------UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 130892 0.74 0.30998
Target:  5'- aGCgggGAcUGAGGCgGGgggcgGCGGUGCCCUCg -3'
miRNA:   3'- -CGa--CU-ACUCCGgCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 130862 0.76 0.251543
Target:  5'- -----cGAGGCgGggGCGGCGCCCCUc -3'
miRNA:   3'- cgacuaCUCCGgCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 130789 0.75 0.257561
Target:  5'- uGCUGAcguaaucGAGGCCGA-GCuGGCGCCCUa -3'
miRNA:   3'- -CGACUa------CUCCGGCUaCG-UCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 130159 0.66 0.758821
Target:  5'- uUUGccGcGGCCGccGCAGCcccagcuGCCCCCc -3'
miRNA:   3'- cGACuaCuCCGGCuaCGUCG-------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127704 0.7 0.502445
Target:  5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3'
miRNA:   3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127164 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.