miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 5' -55 NC_001847.1 + 113488 0.66 0.933747
Target:  5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3'
miRNA:   3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5'
6684 5' -55 NC_001847.1 + 55285 0.67 0.905167
Target:  5'- cCCGGAcGGGCggcaGUCGUGUCCcagcggcGUCUa -3'
miRNA:   3'- -GGCCU-UCCGagg-UAGCACAGG-------UAGGg -5'
6684 5' -55 NC_001847.1 + 129209 0.67 0.905787
Target:  5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3'
miRNA:   3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5'
6684 5' -55 NC_001847.1 + 120260 0.67 0.905787
Target:  5'- gCGGAcGGCcCCGuagcguUCGcUGUCCA-CCCg -3'
miRNA:   3'- gGCCUuCCGaGGU------AGC-ACAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 60995 0.67 0.911257
Target:  5'- aCGGcgccgucGAGGCcgCCAUCGgcgccgcgcGUCaCAUCCCc -3'
miRNA:   3'- gGCC-------UUCCGa-GGUAGCa--------CAG-GUAGGG- -5'
6684 5' -55 NC_001847.1 + 2620 0.67 0.911853
Target:  5'- gCCGGAGGuGCUUCggCGggaccgCCGUCgCCg -3'
miRNA:   3'- -GGCCUUC-CGAGGuaGCaca---GGUAG-GG- -5'
6684 5' -55 NC_001847.1 + 102895 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 40989 0.66 0.921068
Target:  5'- gCCGGGccgcgcucaccuGCUCCggcGUCGUG-CCGUCCUg -3'
miRNA:   3'- -GGCCUuc----------CGAGG---UAGCACaGGUAGGG- -5'
6684 5' -55 NC_001847.1 + 101883 0.66 0.928631
Target:  5'- ---aGGGGCUCCAUCGcGUcggCCAgCCCg -3'
miRNA:   3'- ggccUUCCGAGGUAGCaCA---GGUaGGG- -5'
6684 5' -55 NC_001847.1 + 108978 0.68 0.886194
Target:  5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3'
miRNA:   3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 108884 0.68 0.886194
Target:  5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3'
miRNA:   3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 103133 0.68 0.87921
Target:  5'- gCCGGAGcuucGcGCUCCAcgccCGcGUCCcUCCCg -3'
miRNA:   3'- -GGCCUU----C-CGAGGUa---GCaCAGGuAGGG- -5'
6684 5' -55 NC_001847.1 + 26691 0.72 0.662088
Target:  5'- gCCGGcGGGCUCCAgccgcagcUCGgcGUCCAcgUCCa -3'
miRNA:   3'- -GGCCuUCCGAGGU--------AGCa-CAGGU--AGGg -5'
6684 5' -55 NC_001847.1 + 96487 0.7 0.751732
Target:  5'- gCGcGAGGGCUCCGuguUCGuUGUCCcgUUCg -3'
miRNA:   3'- gGC-CUUCCGAGGU---AGC-ACAGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 92384 0.69 0.824494
Target:  5'- cUCGGAAGGCcgUCCuggAUCugcUGUCCGcCCCg -3'
miRNA:   3'- -GGCCUUCCG--AGG---UAGc--ACAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 5368 0.69 0.832892
Target:  5'- gCCGGGcccAGGCUCCggCG-GUCCGagcggCCg -3'
miRNA:   3'- -GGCCU---UCCGAGGuaGCaCAGGUa----GGg -5'
6684 5' -55 NC_001847.1 + 27149 0.68 0.849133
Target:  5'- uCCGGggGGCgcagCCG-CGgcggCCAgCCCa -3'
miRNA:   3'- -GGCCuuCCGa---GGUaGCaca-GGUaGGG- -5'
6684 5' -55 NC_001847.1 + 105255 0.68 0.849133
Target:  5'- gCCGGcAGGGCcgCCGccUCGccGUCCccGUCCCc -3'
miRNA:   3'- -GGCC-UUCCGa-GGU--AGCa-CAGG--UAGGG- -5'
6684 5' -55 NC_001847.1 + 76617 0.68 0.856963
Target:  5'- aCCGcGgcGGcCUCU-UCGUGUCCcugCCCg -3'
miRNA:   3'- -GGC-CuuCC-GAGGuAGCACAGGua-GGG- -5'
6684 5' -55 NC_001847.1 + 63694 0.68 0.864589
Target:  5'- cCCGGAAGcGC-CCggggccaaccucGUCGUGUgCAcccUCCCc -3'
miRNA:   3'- -GGCCUUC-CGaGG------------UAGCACAgGU---AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.