miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 5' -55 NC_001847.1 + 82 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 320 0.68 0.87921
Target:  5'- gCCGGAGcuucGcGCUCCAcgccCGcGUCCcUCCCg -3'
miRNA:   3'- -GGCCUU----C-CGAGGUa---GCaCAGGuAGGG- -5'
6684 5' -55 NC_001847.1 + 2442 0.68 0.849133
Target:  5'- gCCGGcAGGGCcgCCGccUCGccGUCCccGUCCCc -3'
miRNA:   3'- -GGCC-UUCCGa-GGU--AGCa-CAGG--UAGGG- -5'
6684 5' -55 NC_001847.1 + 2620 0.67 0.911853
Target:  5'- gCCGGAGGuGCUUCggCGggaccgCCGUCgCCg -3'
miRNA:   3'- -GGCCUUC-CGAGGuaGCaca---GGUAG-GG- -5'
6684 5' -55 NC_001847.1 + 5368 0.69 0.832892
Target:  5'- gCCGGGcccAGGCUCCggCG-GUCCGagcggCCg -3'
miRNA:   3'- -GGCCU---UCCGAGGuaGCaCAGGUa----GGg -5'
6684 5' -55 NC_001847.1 + 6071 0.68 0.886194
Target:  5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3'
miRNA:   3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 6165 0.68 0.886194
Target:  5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3'
miRNA:   3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 9732 0.65 0.947243
Target:  5'- uCCGGcggcgccGGGGCagucgCCGUCG-GUCCAcCUCg -3'
miRNA:   3'- -GGCC-------UUCCGa----GGUAGCaCAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 10675 0.66 0.933747
Target:  5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3'
miRNA:   3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5'
6684 5' -55 NC_001847.1 + 15478 0.71 0.732311
Target:  5'- cCUGGggGGCcgCCGUUGcccUCCcgCCCg -3'
miRNA:   3'- -GGCCuuCCGa-GGUAGCac-AGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 19041 0.67 0.892954
Target:  5'- gCCGGcAGGC-CCggCGUcGUCaucguCGUCCCa -3'
miRNA:   3'- -GGCCuUCCGaGGuaGCA-CAG-----GUAGGG- -5'
6684 5' -55 NC_001847.1 + 24194 0.65 0.947673
Target:  5'- cCCGcGAGGCU-CGUCGg--CCcgCCCg -3'
miRNA:   3'- -GGCcUUCCGAgGUAGCacaGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 26396 0.67 0.905787
Target:  5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3'
miRNA:   3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5'
6684 5' -55 NC_001847.1 + 26691 0.72 0.662088
Target:  5'- gCCGGcGGGCUCCAgccgcagcUCGgcGUCCAcgUCCa -3'
miRNA:   3'- -GGCCuUCCGAGGU--------AGCa-CAGGU--AGGg -5'
6684 5' -55 NC_001847.1 + 27149 0.68 0.849133
Target:  5'- uCCGGggGGCgcagCCG-CGgcggCCAgCCCa -3'
miRNA:   3'- -GGCCuuCCGa---GGUaGCaca-GGUaGGG- -5'
6684 5' -55 NC_001847.1 + 27611 0.65 0.947673
Target:  5'- cCCGuuAGGCgcggCCAUCGUuccucGUCCG-CUCg -3'
miRNA:   3'- -GGCcuUCCGa---GGUAGCA-----CAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 33920 0.66 0.938625
Target:  5'- uCgGGGAGGCUggCCucccCGUGUgCAggCCCg -3'
miRNA:   3'- -GgCCUUCCGA--GGua--GCACAgGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 39863 0.67 0.909455
Target:  5'- gCCGGuAGGCUUCGUCcacgcggcccggGUCCAggCCg -3'
miRNA:   3'- -GGCCuUCCGAGGUAGca----------CAGGUagGG- -5'
6684 5' -55 NC_001847.1 + 40989 0.66 0.921068
Target:  5'- gCCGGGccgcgcucaccuGCUCCggcGUCGUG-CCGUCCUg -3'
miRNA:   3'- -GGCCUuc----------CGAGG---UAGCACaGGUAGGG- -5'
6684 5' -55 NC_001847.1 + 46361 0.7 0.789241
Target:  5'- aUCGGggGGCUCC-UCGgcgGacaCCAgcaaCCCg -3'
miRNA:   3'- -GGCCuuCCGAGGuAGCa--Ca--GGUa---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.