miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 5' -55 NC_001847.1 + 131348 0.69 0.807184
Target:  5'- cCCGuGccGGCacgCCGUCGUGcagCaCAUCCCg -3'
miRNA:   3'- -GGC-CuuCCGa--GGUAGCACa--G-GUAGGG- -5'
6684 5' -55 NC_001847.1 + 130255 0.72 0.648828
Target:  5'- gCGGAugcgacgacaaaauGGGCUUCcgCGUGgcugugcCCGUCCCg -3'
miRNA:   3'- gGCCU--------------UCCGAGGuaGCACa------GGUAGGG- -5'
6684 5' -55 NC_001847.1 + 129209 0.67 0.905787
Target:  5'- gCGGGcGGGC-CCGUCGUccgccGcCCAUCCg -3'
miRNA:   3'- gGCCU-UCCGaGGUAGCA-----CaGGUAGGg -5'
6684 5' -55 NC_001847.1 + 128075 0.66 0.925447
Target:  5'- cCCGGgcGGCUCgCcgCGUG-CCuugguggcgaaagCCCa -3'
miRNA:   3'- -GGCCuuCCGAG-GuaGCACaGGua-----------GGG- -5'
6684 5' -55 NC_001847.1 + 127007 0.65 0.947673
Target:  5'- cCCGcGAGGCU-CGUCGg--CCcgCCCg -3'
miRNA:   3'- -GGCcUUCCGAgGUAGCacaGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 123502 1.13 0.002147
Target:  5'- gCCGGAAGGCUCCAUCGUGUCCAUCCCc -3'
miRNA:   3'- -GGCCUUCCGAGGUAGCACAGGUAGGG- -5'
6684 5' -55 NC_001847.1 + 120260 0.67 0.905787
Target:  5'- gCGGAcGGCcCCGuagcguUCGcUGUCCA-CCCg -3'
miRNA:   3'- gGCCUuCCGaGGU------AGC-ACAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 113488 0.66 0.933747
Target:  5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3'
miRNA:   3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5'
6684 5' -55 NC_001847.1 + 108978 0.68 0.886194
Target:  5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3'
miRNA:   3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 108884 0.68 0.886194
Target:  5'- -aGGGAGGCgcggCaAUUGUGUCCAggCUCa -3'
miRNA:   3'- ggCCUUCCGa---GgUAGCACAGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 105255 0.68 0.849133
Target:  5'- gCCGGcAGGGCcgCCGccUCGccGUCCccGUCCCc -3'
miRNA:   3'- -GGCC-UUCCGa-GGU--AGCa-CAGG--UAGGG- -5'
6684 5' -55 NC_001847.1 + 103133 0.68 0.87921
Target:  5'- gCCGGAGcuucGcGCUCCAcgccCGcGUCCcUCCCg -3'
miRNA:   3'- -GGCCUU----C-CGAGGUa---GCaCAGGuAGGG- -5'
6684 5' -55 NC_001847.1 + 102895 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 101883 0.66 0.928631
Target:  5'- ---aGGGGCUCCAUCGcGUcggCCAgCCCg -3'
miRNA:   3'- ggccUUCCGAGGUAGCaCA---GGUaGGG- -5'
6684 5' -55 NC_001847.1 + 100835 0.66 0.938625
Target:  5'- cCCGGgcGGCUCCGgccagggcCGgagcgCCggCCCg -3'
miRNA:   3'- -GGCCuuCCGAGGUa-------GCaca--GGuaGGG- -5'
6684 5' -55 NC_001847.1 + 96487 0.7 0.751732
Target:  5'- gCGcGAGGGCUCCGuguUCGuUGUCCcgUUCg -3'
miRNA:   3'- gGC-CUUCCGAGGU---AGC-ACAGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 92384 0.69 0.824494
Target:  5'- cUCGGAAGGCcgUCCuggAUCugcUGUCCGcCCCg -3'
miRNA:   3'- -GGCCUUCCG--AGG---UAGc--ACAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 90336 0.72 0.658012
Target:  5'- gCCGG-GGGCgcagccgccaaagCCGcCGUcGUCCGUCCCg -3'
miRNA:   3'- -GGCCuUCCGa------------GGUaGCA-CAGGUAGGG- -5'
6684 5' -55 NC_001847.1 + 83726 0.66 0.933747
Target:  5'- gCGGgcGGCUCCGUC-UGcgCCG-CCg -3'
miRNA:   3'- gGCCuuCCGAGGUAGcACa-GGUaGGg -5'
6684 5' -55 NC_001847.1 + 80851 0.66 0.938625
Target:  5'- uCCGGgcGGCggcgCgCGUCGaggCCGUCCg -3'
miRNA:   3'- -GGCCuuCCGa---G-GUAGCacaGGUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.