miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 122872 0.69 0.621891
Target:  5'- uUCCGGGGC--GCGCUCGGGUgGu--- -3'
miRNA:   3'- -GGGUCCCGagCGUGAGCCCGgUuauu -5'
6685 3' -58.2 NC_001847.1 + 72823 0.69 0.621891
Target:  5'- aUCGGGGCcaUgGCGCUCGGGCg----- -3'
miRNA:   3'- gGGUCCCG--AgCGUGAGCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 62792 0.69 0.570873
Target:  5'- gCCCgggGGGGCgagaucgCGCACaagcCGGGCCGAg-- -3'
miRNA:   3'- -GGG---UCCCGa------GCGUGa---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 43642 0.69 0.570873
Target:  5'- -aCAGGGCgcgggCGCACgaCGGGCgAGUGu -3'
miRNA:   3'- ggGUCCCGa----GCGUGa-GCCCGgUUAUu -5'
6685 3' -58.2 NC_001847.1 + 134864 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 98047 0.69 0.611642
Target:  5'- aCCAgcGGGCcgcucucCGCGCUCaggcGGGCCAGUAc -3'
miRNA:   3'- gGGU--CCCGa------GCGUGAG----CCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 97469 0.69 0.600386
Target:  5'- gCCAGGGCcgCGCGCUaagcccgCGGGCUu---- -3'
miRNA:   3'- gGGUCCCGa-GCGUGA-------GCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 1573 0.68 0.683268
Target:  5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3'
miRNA:   3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 103115 0.68 0.683268
Target:  5'- gCgGGGGCUucccCGCGCgagcgCGGGCCGc--- -3'
miRNA:   3'- gGgUCCCGA----GCGUGa----GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 104386 0.68 0.683268
Target:  5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3'
miRNA:   3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 73140 0.68 0.673094
Target:  5'- gCCgCAGGGCccCGCGCcgcucuUCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUG------AGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 6696 0.68 0.652654
Target:  5'- gCC-GGGCgCGCGCgcaGGGCCGAg-- -3'
miRNA:   3'- gGGuCCCGaGCGUGag-CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 92406 0.68 0.673094
Target:  5'- aCCCAGGGgggCGCcagcccgaACUCGcGCCGGUAAg -3'
miRNA:   3'- -GGGUCCCga-GCG--------UGAGCcCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 97950 0.68 0.652654
Target:  5'- aCCGGGcGcCUCGCAC-CGGGCUc---- -3'
miRNA:   3'- gGGUCC-C-GAGCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 74110 0.68 0.652654
Target:  5'- gCCCGGGGCggccgCGCccggggaugugACgcgCGGcGCCGAUGg -3'
miRNA:   3'- -GGGUCCCGa----GCG-----------UGa--GCC-CGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 77252 0.68 0.652654
Target:  5'- gCCCGGGGCggUUGCGCccCGGGCg----- -3'
miRNA:   3'- -GGGUCCCG--AGCGUGa-GCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 129302 0.68 0.642405
Target:  5'- gCCAGGcgGCUCGC-UUCGGGUgGGUGc -3'
miRNA:   3'- gGGUCC--CGAGCGuGAGCCCGgUUAUu -5'
6685 3' -58.2 NC_001847.1 + 123478 0.68 0.632149
Target:  5'- gCCGcGGGCUCG-GCUgGGGCCGc--- -3'
miRNA:   3'- gGGU-CCCGAGCgUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 102244 0.68 0.632149
Target:  5'- gUCCAGGcGCUCGCGCgCGGcGCgCAc--- -3'
miRNA:   3'- -GGGUCC-CGAGCGUGaGCC-CG-GUuauu -5'
6685 3' -58.2 NC_001847.1 + 42987 0.68 0.632149
Target:  5'- gCCC-GGGUUCGCugUCggcGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGAGCGugAG---CCCGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.