miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 104904 0.73 0.383906
Target:  5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3'
miRNA:   3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5'
6685 3' -58.2 NC_001847.1 + 99070 0.73 0.374826
Target:  5'- gCCCGGGGCcgccucuUCGUGCUgGGGCCu---- -3'
miRNA:   3'- -GGGUCCCG-------AGCGUGAgCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 48602 0.73 0.359487
Target:  5'- aCCUuGGGCgCGCGCUCGGccguGCCGAUGu -3'
miRNA:   3'- -GGGuCCCGaGCGUGAGCC----CGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 15641 0.77 0.219669
Target:  5'- cCCCuccGGGCUCGgGCUCGGGCuCGGg-- -3'
miRNA:   3'- -GGGu--CCCGAGCgUGAGCCCG-GUUauu -5'
6685 3' -58.2 NC_001847.1 + 126816 0.81 0.122441
Target:  5'- uCCCAGaaUUCGCACUCGGGCUAAUAAu -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 53017 0.7 0.540726
Target:  5'- -aCAGcGGCggccgcugCGCGCUCGGGCCu---- -3'
miRNA:   3'- ggGUC-CCGa-------GCGUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 68791 0.7 0.540726
Target:  5'- gCCgCGGcGGC-CGCGCgagCGGGCCGAc-- -3'
miRNA:   3'- -GG-GUC-CCGaGCGUGa--GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 134913 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 34597 0.67 0.6934
Target:  5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3'
miRNA:   3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 104386 0.68 0.683268
Target:  5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3'
miRNA:   3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 73140 0.68 0.673094
Target:  5'- gCCgCAGGGCccCGCGCcgcucuUCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUG------AGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 6696 0.68 0.652654
Target:  5'- gCC-GGGCgCGCGCgcaGGGCCGAg-- -3'
miRNA:   3'- gGGuCCCGaGCGUGag-CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 134864 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 98047 0.69 0.611642
Target:  5'- aCCAgcGGGCcgcucucCGCGCUCaggcGGGCCAGUAc -3'
miRNA:   3'- gGGU--CCCGa------GCGUGAG----CCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 43593 0.69 0.611642
Target:  5'- cCCCAGcGUg-GCGCUgGGGCCGGUGc -3'
miRNA:   3'- -GGGUCcCGagCGUGAgCCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 19626 0.69 0.611642
Target:  5'- gCCCGGGGCgccggcgucggCGCGCggccgcuugCGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa----------GCGUGa--------GCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 97469 0.69 0.600386
Target:  5'- gCCAGGGCcgCGCGCUaagcccgCGGGCUu---- -3'
miRNA:   3'- gGGUCCCGa-GCGUGA-------GCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 58834 0.69 0.591198
Target:  5'- gCgAGGGUcgGCACUUGGGCCGGg-- -3'
miRNA:   3'- gGgUCCCGagCGUGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 62792 0.69 0.570873
Target:  5'- gCCCgggGGGGCgagaucgCGCACaagcCGGGCCGAg-- -3'
miRNA:   3'- -GGG---UCCCGa------GCGUGa---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 43642 0.69 0.570873
Target:  5'- -aCAGGGCgcgggCGCACgaCGGGCgAGUGu -3'
miRNA:   3'- ggGUCCCGa----GCGUGa-GCCCGgUUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.