miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 2091 0.73 0.383906
Target:  5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3'
miRNA:   3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5'
6685 3' -58.2 NC_001847.1 + 63111 0.71 0.454148
Target:  5'- cCCCGGGGCcgccgcCGCGCaCGGGUCGGUu- -3'
miRNA:   3'- -GGGUCCCGa-----GCGUGaGCCCGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 28343 0.71 0.463413
Target:  5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 39055 0.71 0.472776
Target:  5'- uCCCgcucguGGGGCUCGCGCagCGGGUUGAg-- -3'
miRNA:   3'- -GGG------UCCCGAGCGUGa-GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 37037 0.71 0.491782
Target:  5'- gCC-GGGCUCGCACUCuagccuGGGCUGGg-- -3'
miRNA:   3'- gGGuCCCGAGCGUGAG------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 37128 0.71 0.501416
Target:  5'- cUCUGGGGCgCGCACgcccagCGGGCCuuUGGg -3'
miRNA:   3'- -GGGUCCCGaGCGUGa-----GCCCGGuuAUU- -5'
6685 3' -58.2 NC_001847.1 + 118878 0.7 0.511133
Target:  5'- aCCCGGGcGCUCgguGCACg-GGGCCGGg-- -3'
miRNA:   3'- -GGGUCC-CGAG---CGUGagCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 31395 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 107729 0.7 0.560772
Target:  5'- cCCCGGGGCUa-CAaccCUUGGGCCGGc-- -3'
miRNA:   3'- -GGGUCCCGAgcGU---GAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 42987 0.68 0.632149
Target:  5'- gCCC-GGGUUCGCugUCggcGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGAGCGugAG---CCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 92406 0.68 0.673094
Target:  5'- aCCCAGGGgggCGCcagcccgaACUCGcGCCGGUAAg -3'
miRNA:   3'- -GGGUCCCga-GCG--------UGAGCcCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 97950 0.68 0.652654
Target:  5'- aCCGGGcGcCUCGCAC-CGGGCUc---- -3'
miRNA:   3'- gGGUCC-C-GAGCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 74110 0.68 0.652654
Target:  5'- gCCCGGGGCggccgCGCccggggaugugACgcgCGGcGCCGAUGg -3'
miRNA:   3'- -GGGUCCCGa----GCG-----------UGa--GCC-CGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 77252 0.68 0.652654
Target:  5'- gCCCGGGGCggUUGCGCccCGGGCg----- -3'
miRNA:   3'- -GGGUCCCG--AGCGUGa-GCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 129302 0.68 0.642405
Target:  5'- gCCAGGcgGCUCGC-UUCGGGUgGGUGc -3'
miRNA:   3'- gGGUCC--CGAGCGuGAGCCCGgUUAUu -5'
6685 3' -58.2 NC_001847.1 + 123478 0.68 0.632149
Target:  5'- gCCGcGGGCUCG-GCUgGGGCCGc--- -3'
miRNA:   3'- gGGU-CCCGAGCgUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 102244 0.68 0.632149
Target:  5'- gUCCAGGcGCUCGCGCgCGGcGCgCAc--- -3'
miRNA:   3'- -GGGUCC-CGAGCGUGaGCC-CG-GUuauu -5'
6685 3' -58.2 NC_001847.1 + 115534 0.69 0.570873
Target:  5'- gCCCcGGGCcCGaGCUCGGGCCc---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 68830 0.69 0.581017
Target:  5'- gCCgCAGGGCgccgCGaagaGCUCGGGCgCGAg-- -3'
miRNA:   3'- -GG-GUCCCGa---GCg---UGAGCCCG-GUUauu -5'
6685 3' -58.2 NC_001847.1 + 103487 0.69 0.601408
Target:  5'- cCUCGGGGCgcgCGgGCUCcGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa--GCgUGAG-CCCGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.