miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 78276 0.66 0.790372
Target:  5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 95539 0.67 0.707496
Target:  5'- cCCUGGGGCUggggccgcgccgcagCaGCGCUgGGGCCAc--- -3'
miRNA:   3'- -GGGUCCCGA---------------G-CGUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 3811 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 44289 0.66 0.75279
Target:  5'- aCCGGcGGCgcggCGCgGCgcggCGGGCCAGc-- -3'
miRNA:   3'- gGGUC-CCGa---GCG-UGa---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 41616 0.66 0.771831
Target:  5'- aCCCGGGcGCUCcggggcCGC-CGGGCgAGUGGg -3'
miRNA:   3'- -GGGUCC-CGAGc-----GUGaGCCCGgUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 66241 0.68 0.683268
Target:  5'- --aAGGGCU-GCACUcucCGGGCCGAg-- -3'
miRNA:   3'- gggUCCCGAgCGUGA---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 79105 0.67 0.6934
Target:  5'- uCCCAGGGgUCGUcgUCGcGGUCAAa-- -3'
miRNA:   3'- -GGGUCCCgAGCGugAGC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 106519 0.66 0.781169
Target:  5'- aCCCGcGGGCacuagCGC-CUCGGGCg----- -3'
miRNA:   3'- -GGGU-CCCGa----GCGuGAGCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 22380 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 120119 0.66 0.751826
Target:  5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3'
miRNA:   3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 115111 0.66 0.790372
Target:  5'- gCCCAGGGCggcggcCGCA---GGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGa-----GCGUgagCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 15408 0.66 0.790372
Target:  5'- gCCGGGuuucgGCUCGCcCUCGGcGCCu---- -3'
miRNA:   3'- gGGUCC-----CGAGCGuGAGCC-CGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 74110 0.68 0.652654
Target:  5'- gCCCGGGGCggccgCGCccggggaugugACgcgCGGcGCCGAUGg -3'
miRNA:   3'- -GGGUCCCGa----GCG-----------UGa--GCC-CGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 92406 0.68 0.673094
Target:  5'- aCCCAGGGgggCGCcagcccgaACUCGcGCCGGUAAg -3'
miRNA:   3'- -GGGUCCCga-GCG--------UGAGCcCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 14320 0.67 0.7135
Target:  5'- uCCCGcuGCUCGCGgUgGGGCCGGg-- -3'
miRNA:   3'- -GGGUccCGAGCGUgAgCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 29283 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 127859 0.66 0.762368
Target:  5'- gCCAGcGGCUCGUACUgCGGaGCg----- -3'
miRNA:   3'- gGGUC-CCGAGCGUGA-GCC-CGguuauu -5'
6685 3' -58.2 NC_001847.1 + 73240 0.66 0.790372
Target:  5'- -gCGGcGGCgcgggCGCGCUCGaGGCCGu--- -3'
miRNA:   3'- ggGUC-CCGa----GCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 66783 0.66 0.75279
Target:  5'- uUCGGGGCUCGUGCUCacgaccGGCUAc--- -3'
miRNA:   3'- gGGUCCCGAGCGUGAGc-----CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 4120 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.