miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 16002 0.74 0.343821
Target:  5'- uUCCuGGGCUCGCACUCGGuGUa----- -3'
miRNA:   3'- -GGGuCCCGAGCGUGAGCC-CGguuauu -5'
6685 3' -58.2 NC_001847.1 + 18990 0.66 0.762368
Target:  5'- gCCCGcGGCcgccagCGC-CUCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGuGAGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 19428 0.67 0.733321
Target:  5'- gCCCGuGGCggcaagCGCACaCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 19626 0.69 0.611642
Target:  5'- gCCCGGGGCgccggcgucggCGCGCggccgcuugCGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGa----------GCGUGa--------GCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 22380 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 23578 0.66 0.775582
Target:  5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3'
miRNA:   3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 24003 0.81 0.122441
Target:  5'- uCCCAGaaUUCGCACUCGGGCUAAUAAu -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 24113 1.07 0.001883
Target:  5'- uCCCAGGGCUCGCACUCGGGCCAAUAAu -3'
miRNA:   3'- -GGGUCCCGAGCGUGAGCCCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 24975 0.67 0.743104
Target:  5'- gUCGGGcGCUCGCugUCGcuguugauGGCCAu--- -3'
miRNA:   3'- gGGUCC-CGAGCGugAGC--------CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 27641 0.7 0.540726
Target:  5'- gCUCGGcaCUCGCGCUCGGGUCGGg-- -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 28100 0.67 0.733321
Target:  5'- gCCCGGGGC-CGCGCgCGacaccGCCGAUu- -3'
miRNA:   3'- -GGGUCCCGaGCGUGaGCc----CGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 28343 0.71 0.463413
Target:  5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 29283 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 30447 0.72 0.444984
Target:  5'- gCCGGGGCU-GCACgaggUGGGCCGc--- -3'
miRNA:   3'- gGGUCCCGAgCGUGa---GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 31395 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 32051 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 32100 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 34284 0.67 0.70348
Target:  5'- gCUGGGcGC-CGCGCUCGcGGCCGu--- -3'
miRNA:   3'- gGGUCC-CGaGCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 34597 0.67 0.6934
Target:  5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3'
miRNA:   3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 37037 0.71 0.491782
Target:  5'- gCC-GGGCUCGCACUCuagccuGGGCUGGg-- -3'
miRNA:   3'- gGGuCCCGAGCGUGAG------CCCGGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.