miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 1573 0.68 0.683268
Target:  5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3'
miRNA:   3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 2091 0.73 0.383906
Target:  5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3'
miRNA:   3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5'
6685 3' -58.2 NC_001847.1 + 2509 0.66 0.751826
Target:  5'- gCgAGGGCcgccUCGCGCUuugcugcCGGGCCGcgGGa -3'
miRNA:   3'- gGgUCCCG----AGCGUGA-------GCCCGGUuaUU- -5'
6685 3' -58.2 NC_001847.1 + 2537 0.66 0.762368
Target:  5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3'
miRNA:   3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 2889 0.67 0.7135
Target:  5'- gCCGGGuGCgUCGCcguUCGGGCCGGa-- -3'
miRNA:   3'- gGGUCC-CG-AGCGug-AGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 2941 0.73 0.392287
Target:  5'- --gAGGGCUCGCACUCcGGcGCCGu--- -3'
miRNA:   3'- gggUCCCGAGCGUGAG-CC-CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 3144 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 3811 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 4120 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 5793 0.66 0.762368
Target:  5'- cCCCGGGcccggcaccgcGCUUGCGCUUGGcgcGCCGGg-- -3'
miRNA:   3'- -GGGUCC-----------CGAGCGUGAGCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 6696 0.68 0.652654
Target:  5'- gCC-GGGCgCGCGCgcaGGGCCGAg-- -3'
miRNA:   3'- gGGuCCCGaGCGUGag-CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 8170 0.67 0.70348
Target:  5'- --aAGGGCUCGCGgUCGuugaGGCCGGa-- -3'
miRNA:   3'- gggUCCCGAGCGUgAGC----CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 8475 0.67 0.72345
Target:  5'- gCCgGGGGCg-GCGCUC-GGCCGGg-- -3'
miRNA:   3'- -GGgUCCCGagCGUGAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 10580 0.67 0.7135
Target:  5'- gCCGGcGGCcccccCGCGCgcgCGGGCCGGc-- -3'
miRNA:   3'- gGGUC-CCGa----GCGUGa--GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 13118 0.66 0.781169
Target:  5'- gCCGGGGCgCGCGggCGGcGCCGc--- -3'
miRNA:   3'- gGGUCCCGaGCGUgaGCC-CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 13454 0.66 0.771831
Target:  5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3'
miRNA:   3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 14205 0.66 0.762368
Target:  5'- -gCGGGGCUgGCGgUCaGGCCGGc-- -3'
miRNA:   3'- ggGUCCCGAgCGUgAGcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 14320 0.67 0.7135
Target:  5'- uCCCGcuGCUCGCGgUgGGGCCGGg-- -3'
miRNA:   3'- -GGGUccCGAGCGUgAgCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 15408 0.66 0.790372
Target:  5'- gCCGGGuuucgGCUCGCcCUCGGcGCCu---- -3'
miRNA:   3'- gGGUCC-----CGAGCGuGAGCC-CGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 15641 0.77 0.219669
Target:  5'- cCCCuccGGGCUCGgGCUCGGGCuCGGg-- -3'
miRNA:   3'- -GGGu--CCCGAGCgUGAGCCCG-GUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.