Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6685 | 3' | -58.2 | NC_001847.1 | + | 105350 | 0.66 | 0.762368 |
Target: 5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3' miRNA: 3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 73240 | 0.66 | 0.790372 |
Target: 5'- -gCGGcGGCgcgggCGCGCUCGaGGCCGu--- -3' miRNA: 3'- ggGUC-CCGa----GCGUGAGC-CCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 5793 | 0.66 | 0.762368 |
Target: 5'- cCCCGGGcccggcaccgcGCUUGCGCUUGGcgcGCCGGg-- -3' miRNA: 3'- -GGGUCC-----------CGAGCGUGAGCC---CGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 126391 | 0.66 | 0.775582 |
Target: 5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3' miRNA: 3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 13118 | 0.66 | 0.781169 |
Target: 5'- gCCGGGGCgCGCGggCGGcGCCGc--- -3' miRNA: 3'- gGGUCCCGaGCGUgaGCC-CGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 132096 | 0.66 | 0.762368 |
Target: 5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3' miRNA: 3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 123571 | 0.66 | 0.790372 |
Target: 5'- gCCGGGGC-CGcCGCgagCGgGGCCGGa-- -3' miRNA: 3'- gGGUCCCGaGC-GUGa--GC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 114089 | 0.66 | 0.771831 |
Target: 5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3' miRNA: 3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 134199 | 0.66 | 0.790372 |
Target: 5'- gCguGGaGCggCGCGCgCGGGCCGAg-- -3' miRNA: 3'- gGguCC-CGa-GCGUGaGCCCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 15408 | 0.66 | 0.790372 |
Target: 5'- gCCGGGuuucgGCUCGCcCUCGGcGCCu---- -3' miRNA: 3'- gGGUCC-----CGAGCGuGAGCC-CGGuuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 13454 | 0.66 | 0.771831 |
Target: 5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3' miRNA: 3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 105957 | 0.66 | 0.762368 |
Target: 5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3' miRNA: 3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78232 | 0.66 | 0.790372 |
Target: 5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3' miRNA: 3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78276 | 0.66 | 0.790372 |
Target: 5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3' miRNA: 3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 45504 | 0.66 | 0.790372 |
Target: 5'- gCCCGGGGCgggCGCcgccGC-CGGGCg----- -3' miRNA: 3'- -GGGUCCCGa--GCG----UGaGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 90864 | 0.66 | 0.790372 |
Target: 5'- gCCGGGGCUgGUG-UCGaGGCCGGg-- -3' miRNA: 3'- gGGUCCCGAgCGUgAGC-CCGGUUauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 2509 | 0.66 | 0.751826 |
Target: 5'- gCgAGGGCcgccUCGCGCUuugcugcCGGGCCGcgGGa -3' miRNA: 3'- gGgUCCCG----AGCGUGA-------GCCCGGUuaUU- -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 78979 | 0.66 | 0.75279 |
Target: 5'- cCUCGGGGg-CGUGCUCGGGCg----- -3' miRNA: 3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 18990 | 0.66 | 0.762368 |
Target: 5'- gCCCGcGGCcgccagCGC-CUCGGGCCGc--- -3' miRNA: 3'- -GGGUcCCGa-----GCGuGAGCCCGGUuauu -5' |
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6685 | 3' | -58.2 | NC_001847.1 | + | 84641 | 0.66 | 0.771831 |
Target: 5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3' miRNA: 3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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