miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 134913 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 134864 0.69 0.621891
Target:  5'- gCCCGcgcGGGCUCgGCggcccccggGCUCGGGCCc---- -3'
miRNA:   3'- -GGGU---CCCGAG-CG---------UGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 134208 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 134199 0.66 0.790372
Target:  5'- gCguGGaGCggCGCGCgCGGGCCGAg-- -3'
miRNA:   3'- gGguCC-CGa-GCGUGaGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 132096 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 131156 0.71 0.463413
Target:  5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 129302 0.68 0.642405
Target:  5'- gCCAGGcgGCUCGC-UUCGGGUgGGUGc -3'
miRNA:   3'- gGGUCC--CGAGCGuGAGCCCGgUUAUu -5'
6685 3' -58.2 NC_001847.1 + 127859 0.66 0.762368
Target:  5'- gCCAGcGGCUCGUACUgCGGaGCg----- -3'
miRNA:   3'- gGGUC-CCGAGCGUGA-GCC-CGguuauu -5'
6685 3' -58.2 NC_001847.1 + 126926 1.07 0.001883
Target:  5'- uCCCAGGGCUCGCACUCGGGCCAAUAAu -3'
miRNA:   3'- -GGGUCCCGAGCGUGAGCCCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 126816 0.81 0.122441
Target:  5'- uCCCAGaaUUCGCACUCGGGCUAAUAAu -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 126533 0.66 0.781169
Target:  5'- cCCCggcGGGGCUUGCGCUgcGGCUGAc-- -3'
miRNA:   3'- -GGG---UCCCGAGCGUGAgcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 126391 0.66 0.775582
Target:  5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3'
miRNA:   3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 125193 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 123571 0.66 0.790372
Target:  5'- gCCGGGGC-CGcCGCgagCGgGGCCGGa-- -3'
miRNA:   3'- gGGUCCCGaGC-GUGa--GC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 123517 0.7 0.560772
Target:  5'- gCCAGGGCUgcCGCggGCUCGgcuaaGGCCAAg-- -3'
miRNA:   3'- gGGUCCCGA--GCG--UGAGC-----CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 123478 0.68 0.632149
Target:  5'- gCCGcGGGCUCG-GCUgGGGCCGc--- -3'
miRNA:   3'- gGGU-CCCGAGCgUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 122872 0.69 0.621891
Target:  5'- uUCCGGGGC--GCGCUCGGGUgGu--- -3'
miRNA:   3'- -GGGUCCCGagCGUGAGCCCGgUuauu -5'
6685 3' -58.2 NC_001847.1 + 121180 0.67 0.70348
Target:  5'- gCCAggggcGGGCUCGC-CaCGGGCCGc--- -3'
miRNA:   3'- gGGU-----CCCGAGCGuGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 120700 0.66 0.762368
Target:  5'- -gCAGcgcGGCcgCGCGCUCGGcGCCAAa-- -3'
miRNA:   3'- ggGUC---CCGa-GCGUGAGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 120119 0.66 0.751826
Target:  5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3'
miRNA:   3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.