miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 78276 0.66 0.790372
Target:  5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 78232 0.66 0.790372
Target:  5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3'
miRNA:   3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 77252 0.68 0.652654
Target:  5'- gCCCGGGGCggUUGCGCccCGGGCg----- -3'
miRNA:   3'- -GGGUCCCG--AGCGUGa-GCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 74110 0.68 0.652654
Target:  5'- gCCCGGGGCggccgCGCccggggaugugACgcgCGGcGCCGAUGg -3'
miRNA:   3'- -GGGUCCCGa----GCG-----------UGa--GCC-CGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 73240 0.66 0.790372
Target:  5'- -gCGGcGGCgcgggCGCGCUCGaGGCCGu--- -3'
miRNA:   3'- ggGUC-CCGa----GCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 73140 0.68 0.673094
Target:  5'- gCCgCAGGGCccCGCGCcgcucuUCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUG------AGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 72823 0.69 0.621891
Target:  5'- aUCGGGGCcaUgGCGCUCGGGCg----- -3'
miRNA:   3'- gGGUCCCG--AgCGUGAGCCCGguuauu -5'
6685 3' -58.2 NC_001847.1 + 70380 0.67 0.70348
Target:  5'- gCCGGGGCgcgagcUCGCGCU--GGCCAAg-- -3'
miRNA:   3'- gGGUCCCG------AGCGUGAgcCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 68830 0.69 0.581017
Target:  5'- gCCgCAGGGCgccgCGaagaGCUCGGGCgCGAg-- -3'
miRNA:   3'- -GG-GUCCCGa---GCg---UGAGCCCG-GUUauu -5'
6685 3' -58.2 NC_001847.1 + 68791 0.7 0.540726
Target:  5'- gCCgCGGcGGC-CGCGCgagCGGGCCGAc-- -3'
miRNA:   3'- -GG-GUC-CCGaGCGUGa--GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 66783 0.66 0.75279
Target:  5'- uUCGGGGCUCGUGCUCacgaccGGCUAc--- -3'
miRNA:   3'- gGGUCCCGAGCGUGAGc-----CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 66241 0.68 0.683268
Target:  5'- --aAGGGCU-GCACUcucCGGGCCGAg-- -3'
miRNA:   3'- gggUCCCGAgCGUGA---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 63273 0.67 0.733321
Target:  5'- ---cGGGCcgCGCGCUCGcGGCCGc--- -3'
miRNA:   3'- ggguCCCGa-GCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 63111 0.71 0.454148
Target:  5'- cCCCGGGGCcgccgcCGCGCaCGGGUCGGUu- -3'
miRNA:   3'- -GGGUCCCGa-----GCGUGaGCCCGGUUAuu -5'
6685 3' -58.2 NC_001847.1 + 62792 0.69 0.570873
Target:  5'- gCCCgggGGGGCgagaucgCGCACaagcCGGGCCGAg-- -3'
miRNA:   3'- -GGG---UCCCGa------GCGUGa---GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 61838 0.67 0.6934
Target:  5'- gCCAGGGUggugUCGUACUCcagGGGCgGGUc- -3'
miRNA:   3'- gGGUCCCG----AGCGUGAG---CCCGgUUAuu -5'
6685 3' -58.2 NC_001847.1 + 58834 0.69 0.591198
Target:  5'- gCgAGGGUcgGCACUUGGGCCGGg-- -3'
miRNA:   3'- gGgUCCCGagCGUGAGCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 53017 0.7 0.540726
Target:  5'- -aCAGcGGCggccgcugCGCGCUCGGGCCu---- -3'
miRNA:   3'- ggGUC-CCGa-------GCGUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 48602 0.73 0.359487
Target:  5'- aCCUuGGGCgCGCGCUCGGccguGCCGAUGu -3'
miRNA:   3'- -GGGuCCCGaGCGUGAGCC----CGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 45504 0.66 0.790372
Target:  5'- gCCCGGGGCgggCGCcgccGC-CGGGCg----- -3'
miRNA:   3'- -GGGUCCCGa--GCG----UGaGCCCGguuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.